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Add output configuration for Kraken Krona chart

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This commit is contained in:
Thomas A. Christensen II 2022-06-14 08:48:16 -05:00
parent fa87975983
commit 5db450b7b5
Signed by: millironx
GPG key ID: 139C07724802BC5D
1 changed files with 8 additions and 0 deletions
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8
conf/modules.config
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@ -293,6 +293,14 @@ process {
] ]
} }
withName: KRONA_IMPORTKRAKEN {
publishDir = [
path: { "${params.outdir}/krona" },
mode: params.publish_dir_mode,
pattern: '*.{html}'
]
}
withName: METAPHLAN3 { withName: METAPHLAN3 {
ext.args = { "${meta.db_params}" } ext.args = { "${meta.db_params}" }
ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" } ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" }