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fix: patch inputs to correspond to previous version

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This commit is contained in:
Moritz E. Beber 2022-10-05 13:51:15 +02:00
parent 180cac0395
commit 5f3dbd28de
3 changed files with 25 additions and 4 deletions
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3
modules.json
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@ -119,7 +119,8 @@
}, },
"minimap2/index": { "minimap2/index": {
"branch": "master", "branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905" "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"patch": "modules/nf-core/minimap2/index/minimap2-index.diff"
}, },
"motus/merge": { "motus/merge": {
"branch": "master", "branch": "master",

6
modules/nf-core/minimap2/index/main.nf generated
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@ -7,11 +7,11 @@ process MINIMAP2_INDEX {
'quay.io/biocontainers/minimap2:2.21--h5bf99c6_0' }" 'quay.io/biocontainers/minimap2:2.21--h5bf99c6_0' }"
input: input:
tuple val(meta), path(fasta) path fasta
output: output:
tuple val(meta), path("*.mmi"), emit: index path "*.mmi" , emit: index
path "versions.yml" , emit: versions path "versions.yml" , emit: versions
when: when:
task.ext.when == null || task.ext.when task.ext.when == null || task.ext.when

20
modules/nf-core/minimap2/index/minimap2-index.diff generated Normal file
View file

@ -0,0 +1,20 @@
Changes in module 'nf-core/minimap2/index'
--- modules/nf-core/minimap2/index/main.nf
+++ modules/nf-core/minimap2/index/main.nf
@@ -7,11 +7,11 @@
'quay.io/biocontainers/minimap2:2.21--h5bf99c6_0' }"
input:
- tuple val(meta), path(fasta)
+ path fasta
output:
- tuple val(meta), path("*.mmi"), emit: index
- path "versions.yml" , emit: versions
+ path "*.mmi" , emit: index
+ path "versions.yml" , emit: versions
when:
task.ext.when == null || task.ext.when
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