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fix: adapt to new samtools/view input

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This commit is contained in:
Moritz E. Beber 2022-10-05 13:49:35 +02:00
parent f5af9fd939
commit 180cac0395
1 changed files with 1 additions and 1 deletions
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subworkflows/local/longread_hostremoval.nf
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@ -33,7 +33,7 @@ workflow LONGREAD_HOSTREMOVAL {
}
SAMTOOLS_VIEW ( ch_minimap2_mapped , [] )
SAMTOOLS_VIEW ( ch_minimap2_mapped , [], [] )
ch_versions = ch_versions.mix( SAMTOOLS_VIEW.out.versions.first() )
SAMTOOLS_BAM2FQ ( SAMTOOLS_VIEW.out.bam, false )