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Add path parameters
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1 changed files with 5 additions and 3 deletions
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@ -11,9 +11,11 @@ WorkflowTaxprofiler.initialise(params, log)
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// TODO nf-core: Add all file path parameters for the pipeline to the list below
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// Check input path parameters to see if they exist
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def checkPathParamList = [ params.input, params.databases, params.hostremoval_reference,
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params.shortread_hostremoval_index, params.multiqc_config,
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params.shortread_qc_adapterlist
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def checkPathParamList = [ params.input, params.genome, params.databases,
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params.outdir, params.longread_hostremoval_index
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params.hostremoval_reference, params.shortread_hostremoval_index,
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params.multiqc_config, params.shortread_qc_adapterlist,
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params.krona_taxonomy_directory
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]
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for (param in checkPathParamList) { if (param) { file(param, checkIfExists: true) } }
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