millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-22 09:49:57 +00:00
Code Issues Releases Packages Activity

Fix the non-updated KAIJU2TABLE name

Browse source
This commit is contained in:
James Fellows Yates 2023-03-06 10:47:36 +01:00
parent a2a1b9cbf0
commit 735212c9ee
1 changed files with 4 additions and 4 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

8
subworkflows/local/profiling.nf
View file

@ -272,10 +272,10 @@ workflow PROFILING {
ch_versions = ch_versions.mix( KAIJU_KAIJU.out.versions.first() ) ch_versions = ch_versions.mix( KAIJU_KAIJU.out.versions.first() )
ch_raw_classifications = ch_raw_classifications.mix( KAIJU_KAIJU.out.results ) ch_raw_classifications = ch_raw_classifications.mix( KAIJU_KAIJU.out.results )
KAIJU_KAIJU2TABLE ( KAIJU_KAIJU.out.results, ch_input_for_kaiju.db, params.kaiju_taxon_rank) KAIJU_KAIJU2TABLE_SINGLE ( KAIJU_KAIJU_SINGLE.out.results, ch_input_for_kaiju.db, params.kaiju_taxon_rank)
ch_versions = ch_versions.mix( KAIJU_KAIJU2TABLE.out.versions ) ch_versions = ch_versions.mix( KAIJU_KAIJU2TABLE_SINGLE.out.versions )
ch_multiqc_files = ch_multiqc_files.mix( KAIJU_KAIJU2TABLE.out.summary ) ch_multiqc_files = ch_multiqc_files.mix( KAIJU_KAIJU2TABLE_SINGLE.out.summary )
ch_raw_profiles = ch_raw_profiles.mix( KAIJU_KAIJU2TABLE.out.summary ) ch_raw_profiles = ch_raw_profiles.mix( KAIJU_KAIJU2TABLE_SINGLE.out.summary )
} }
if ( params.run_diamond ) { if ( params.run_diamond ) {