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chore: add Bracken to test configs

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This commit is contained in:
Moritz E. Beber 2022-10-14 12:18:55 +02:00
parent ca38d002de
commit 767663d975
5 changed files with 5 additions and 0 deletions
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1
conf/test.config
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@ -34,6 +34,7 @@ params {
hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta' hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta'
run_kaiju = true run_kaiju = true
run_kraken2 = true run_kraken2 = true
run_bracken = true
run_malt = true run_malt = true
run_metaphlan3 = true run_metaphlan3 = true
run_centrifuge = true run_centrifuge = true

1
conf/test_nopreprocessing.config
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@ -33,6 +33,7 @@ params {
hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta' hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta'
run_kaiju = true run_kaiju = true
run_kraken2 = true run_kraken2 = true
run_bracken = true
run_malt = true run_malt = true
run_metaphlan3 = true run_metaphlan3 = true
run_centrifuge = true run_centrifuge = true

1
conf/test_noprofiling.config
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@ -34,6 +34,7 @@ params {
hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta' hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta'
run_kaiju = false run_kaiju = false
run_kraken2 = false run_kraken2 = false
run_bracken = false
run_malt = false run_malt = false
run_metaphlan3 = false run_metaphlan3 = false
run_centrifuge = false run_centrifuge = false

1
conf/test_nothing.config
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@ -33,6 +33,7 @@ params {
hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta' hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta'
run_kaiju = false run_kaiju = false
run_kraken2 = false run_kraken2 = false
run_bracken = false
run_malt = false run_malt = false
run_metaphlan3 = false run_metaphlan3 = false
run_centrifuge = false run_centrifuge = false

1
conf/test_pep.config
View file

@ -19,6 +19,7 @@ params {
hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta' hostremoval_reference = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta'
run_kaiju = true run_kaiju = true
run_kraken2 = true run_kraken2 = true
run_bracken = true
run_malt = true run_malt = true
run_metaphlan3 = true run_metaphlan3 = true
run_centrifuge = true run_centrifuge = true