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This commit is contained in:
James Fellows Yates 2022-04-11 13:40:24 +02:00
parent ff2e508a38
commit 78182c2a8c
1 changed files with 4 additions and 4 deletions
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8
workflows/taxprofiler.nf
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@ -125,7 +125,7 @@ workflow TAXPROFILER {
} else {
ch_longreads_preprocessed = INPUT_CHECK.out.nanopore
}
/*
SUBWORKFLOW: COMPLEXITY FILTERING
*/
@ -146,12 +146,12 @@ workflow TAXPROFILER {
} else {
ch_shortreads_hostremoved = ch_shortreads_filtered
}
/*
SUBWORKFLOW: PROFILING
*/
PROFILING ( ch_shortreads_hostremoved ch_longreads_preprocessed, DB_CHECK.out.dbs )
PROFILING ( ch_shortreads_hostremoved, ch_longreads_preprocessed, DB_CHECK.out.dbs )
ch_versions = ch_versions.mix( PROFILING.out.versions )
/*
@ -191,7 +191,7 @@ workflow TAXPROFILER {
if (params.shortread_hostremoval) {
ch_multiqc_files = ch_multiqc_files.mix(SHORTREAD_HOSTREMOVAL.out.mqc.collect{it[1]}.ifEmpty([]))
}
ch_multiqc_files = ch_multiqc_files.mix( PROFILING.out.mqc )
// TODO create multiQC module for metaphlan