millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-22 12:19:54 +00:00
Code Issues Releases Packages Activity

Add comma

Browse source
This commit is contained in:
James Fellows Yates 2022-04-11 13:40:24 +02:00
parent ff2e508a38
commit 78182c2a8c
1 changed files with 4 additions and 4 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

8
workflows/taxprofiler.nf
View file

@ -125,7 +125,7 @@ workflow TAXPROFILER {
} else { } else {
ch_longreads_preprocessed = INPUT_CHECK.out.nanopore ch_longreads_preprocessed = INPUT_CHECK.out.nanopore
} }
/* /*
SUBWORKFLOW: COMPLEXITY FILTERING SUBWORKFLOW: COMPLEXITY FILTERING
*/ */
@ -146,12 +146,12 @@ workflow TAXPROFILER {
} else { } else {
ch_shortreads_hostremoved = ch_shortreads_filtered ch_shortreads_hostremoved = ch_shortreads_filtered
} }
/* /*
SUBWORKFLOW: PROFILING SUBWORKFLOW: PROFILING
*/ */
PROFILING ( ch_shortreads_hostremoved ch_longreads_preprocessed, DB_CHECK.out.dbs ) PROFILING ( ch_shortreads_hostremoved, ch_longreads_preprocessed, DB_CHECK.out.dbs )
ch_versions = ch_versions.mix( PROFILING.out.versions ) ch_versions = ch_versions.mix( PROFILING.out.versions )
/* /*
@ -191,7 +191,7 @@ workflow TAXPROFILER {
if (params.shortread_hostremoval) { if (params.shortread_hostremoval) {
ch_multiqc_files = ch_multiqc_files.mix(SHORTREAD_HOSTREMOVAL.out.mqc.collect{it[1]}.ifEmpty([])) ch_multiqc_files = ch_multiqc_files.mix(SHORTREAD_HOSTREMOVAL.out.mqc.collect{it[1]}.ifEmpty([]))
} }
ch_multiqc_files = ch_multiqc_files.mix( PROFILING.out.mqc ) ch_multiqc_files = ch_multiqc_files.mix( PROFILING.out.mqc )
// TODO create multiQC module for metaphlan // TODO create multiQC module for metaphlan