millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-22 20:39:55 +00:00
Code Issues Releases Packages Activity

Merge branch 'support-aligned-reads' of github.com:nf-core/taxprofiler into support-aligned-reads

Browse source
This commit is contained in:
James Fellows Yates 2022-06-09 08:16:01 +02:00
commit 800c0dd2aa
1 changed files with 0 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

1
subworkflows/local/profiling.nf
View file

@ -67,7 +67,6 @@ workflow PROFILING {
.map { .map {
meta, reads, db_meta, db -> meta, reads, db_meta, db ->
def sam_format = params.malt_save_reads ? ' --alignments ./ -za false' : "" def sam_format = params.malt_save_reads ? ' --alignments ./ -za false' : ""
// TODO wut? [9a/a441d6] Submitted process > NFCORE_TAXPROFILER:TAXPROFILER:PROFILING:MALT_RUN (null)
def temp_meta = [ id: meta['db_name'] ] def temp_meta = [ id: meta['db_name'] ]
def new_db_meta = db_meta.clone() def new_db_meta = db_meta.clone()
new_db_meta['db_params'] = db_meta['db_params'] + sam_format new_db_meta['db_params'] = db_meta['db_params'] + sam_format