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Fix kraken2 module
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parent
231253227c
commit
98dc8014a5
2 changed files with 5 additions and 6 deletions
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@ -24,12 +24,12 @@
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"multiqc": {
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"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
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},
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"untar": {
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"git_sha": "e080f4c8acf5760039ed12ec1f206170f3f9a918"
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},
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"porechop": {
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"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
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},
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"untar": {
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"git_sha": "e080f4c8acf5760039ed12ec1f206170f3f9a918"
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}
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}
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}
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}
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}
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3
modules/nf-core/modules/kraken2/kraken2/main.nf
generated
3
modules/nf-core/modules/kraken2/kraken2/main.nf
generated
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@ -32,12 +32,11 @@ process KRAKEN2_KRAKEN2 {
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--threads $task.cpus \\
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--unclassified-out $unclassified \\
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--classified-out $classified \\
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$args \\
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--report ${prefix}.kraken2.report.txt \\
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--gzip-compressed \\
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$paired \\
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$args \\
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$reads
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pigz -p $task.cpus *.fastq
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