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debug for database csv file

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JIANHONG OU 2022-06-03 14:50:03 -04:00
parent 3cd3d2dad3
commit 9fa6ecad56
1 changed files with 5 additions and 1 deletions
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6
.github/workflows/ci.yml vendored
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@ -116,7 +116,11 @@ jobs:
run: | run: |
wget https://raw.githubusercontent.com/motu-tool/mOTUs/master/motus/downloadDB.py wget https://raw.githubusercontent.com/motu-tool/mOTUs/master/motus/downloadDB.py
python downloadDB.py > download_db_log.txt python downloadDB.py > download_db_log.txt
echo 'tool,db_name,db_params,db_path\nmotus,db_mOTU,,db_mOTU' > 'database_motus.csv' echo 'tool,db_name,db_params,db_path' > 'database_motus.csv'
echo 'motus,db_mOTU,,db_mOTU' >> 'database_motus.csv'
cat database_motus.csv
echo $PWD
ls $PWD
- name: Run pipeline with test data - name: Run pipeline with test data
run: | run: |