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Switch to string interpolation
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1 changed files with 5 additions and 5 deletions
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@ -76,18 +76,18 @@ workflow PROFILING {
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ch_input_for_centrifuge = ch_input_for_profiling.centrifuge
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.filter{
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if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] Centrifuge currently does not accept FASTA files as input. Skipping Centrifuge for sample " + it[0].id
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!it[0].is_fasta
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if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] Centrifuge currently does not accept FASTA files as input. Skipping Centrifuge for sample ${it[0].id}."
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!it[0].is_fasta
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}
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.multiMap {
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it ->
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reads: [ it[0] + it[2], it[1] ]
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db: it[3]
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reads: [ it[0] + it[2], it[1] ]
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db: it[3]
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}
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ch_input_for_metaphlan3 = ch_input_for_profiling.metaphlan3
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.filter{
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if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] MetaPhlAn3 currently does not accept FASTA files as input. Skipping MetaPhlAn3 for sample " + it[0].id
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if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] MetaPhlAn3 currently does not accept FASTA files as input. Skipping MetaPhlAn3 for sample ${it[0].id}."
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!it[0].is_fasta
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}
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.multiMap {
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