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Switch to string interpolation

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This commit is contained in:
James Fellows Yates 2022-04-20 09:25:54 +02:00
parent 60d232d62c
commit 9fd94b1389
1 changed files with 5 additions and 5 deletions
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subworkflows/local/profiling.nf
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@ -76,7 +76,7 @@ workflow PROFILING {
ch_input_for_centrifuge = ch_input_for_profiling.centrifuge ch_input_for_centrifuge = ch_input_for_profiling.centrifuge
.filter{ .filter{
if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] Centrifuge currently does not accept FASTA files as input. Skipping Centrifuge for sample " + it[0].id if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] Centrifuge currently does not accept FASTA files as input. Skipping Centrifuge for sample ${it[0].id}."
!it[0].is_fasta !it[0].is_fasta
} }
.multiMap { .multiMap {
@ -87,7 +87,7 @@ workflow PROFILING {
ch_input_for_metaphlan3 = ch_input_for_profiling.metaphlan3 ch_input_for_metaphlan3 = ch_input_for_profiling.metaphlan3
.filter{ .filter{
if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] MetaPhlAn3 currently does not accept FASTA files as input. Skipping MetaPhlAn3 for sample " + it[0].id if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] MetaPhlAn3 currently does not accept FASTA files as input. Skipping MetaPhlAn3 for sample ${it[0].id}."
!it[0].is_fasta !it[0].is_fasta
} }
.multiMap { .multiMap {