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James Fellows Yates 2022-12-02 12:49:00 +01:00
parent a3cd188b1f
commit ab42f6b662
1 changed files with 1 additions and 1 deletions
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subworkflows/local/profiling.nf
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@ -147,7 +147,7 @@ workflow PROFILING {
def ch_kraken2_output = KRAKEN2_KRAKEN2.out.report def ch_kraken2_output = KRAKEN2_KRAKEN2.out.report
.filter { .filter {
meta, report -> meta, report ->
if ( meta['instrument_platform'] == 'OXFORD_NANOPORE' ) log.warn "[nf-core/taxprofiler] Bracken has not been evaluated for long-read data. Skipping Bracken for sample ${meta.id}." if ( meta['instrument_platform'] == 'OXFORD_NANOPORE' ) log.warn "[nf-core/taxprofiler] Bracken has not been evaluated for Nanopore data. Skipping Bracken for sample ${meta.id}."
meta['tool'] == 'bracken' && meta['instrument_platform'] != 'OXFORD_NANOPORE' meta['tool'] == 'bracken' && meta['instrument_platform'] != 'OXFORD_NANOPORE'