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Add the visualization workflow to the main workflow

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This commit is contained in:
Thomas A. Christensen II 2022-06-20 09:03:47 -05:00
parent a40a442178
commit ad9bc4b7e9
Signed by: millironx
GPG key ID: 139C07724802BC5D
1 changed files with 7 additions and 0 deletions
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7
workflows/taxprofiler.nf
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@ -62,6 +62,7 @@ include { SHORTREAD_HOSTREMOVAL } from '../subworkflows/local/shortread_
include { LONGREAD_HOSTREMOVAL } from '../subworkflows/local/longread_hostremoval' include { LONGREAD_HOSTREMOVAL } from '../subworkflows/local/longread_hostremoval'
include { SHORTREAD_COMPLEXITYFILTERING } from '../subworkflows/local/shortread_complexityfiltering' include { SHORTREAD_COMPLEXITYFILTERING } from '../subworkflows/local/shortread_complexityfiltering'
include { PROFILING } from '../subworkflows/local/profiling' include { PROFILING } from '../subworkflows/local/profiling'
include { VISUALIZATION_KRONA } from '../subworkflows/local/visualization_krona'
/* /*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@ -209,6 +210,12 @@ workflow TAXPROFILER {
PROFILING ( ch_reads_runmerged, DB_CHECK.out.dbs ) PROFILING ( ch_reads_runmerged, DB_CHECK.out.dbs )
ch_versions = ch_versions.mix( PROFILING.out.versions ) ch_versions = ch_versions.mix( PROFILING.out.versions )
/*
SUBWORKFLOW: VISUALIZATION_KRONA
*/
VISUALIZATION_KRONA ( PROFILING.out.profiles )
ch_versions = ch_versions.mix( VISUALIZATION_KRONA.out.versions )
/* /*
MODULE: MultiQC MODULE: MultiQC
*/ */