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Add the visualization workflow to the main workflow
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1 changed files with 7 additions and 0 deletions
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@ -62,6 +62,7 @@ include { SHORTREAD_HOSTREMOVAL } from '../subworkflows/local/shortread_
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include { LONGREAD_HOSTREMOVAL } from '../subworkflows/local/longread_hostremoval'
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include { LONGREAD_HOSTREMOVAL } from '../subworkflows/local/longread_hostremoval'
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include { SHORTREAD_COMPLEXITYFILTERING } from '../subworkflows/local/shortread_complexityfiltering'
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include { SHORTREAD_COMPLEXITYFILTERING } from '../subworkflows/local/shortread_complexityfiltering'
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include { PROFILING } from '../subworkflows/local/profiling'
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include { PROFILING } from '../subworkflows/local/profiling'
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include { VISUALIZATION_KRONA } from '../subworkflows/local/visualization_krona'
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/*
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/*
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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@ -209,6 +210,12 @@ workflow TAXPROFILER {
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PROFILING ( ch_reads_runmerged, DB_CHECK.out.dbs )
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PROFILING ( ch_reads_runmerged, DB_CHECK.out.dbs )
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ch_versions = ch_versions.mix( PROFILING.out.versions )
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ch_versions = ch_versions.mix( PROFILING.out.versions )
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/*
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SUBWORKFLOW: VISUALIZATION_KRONA
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*/
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VISUALIZATION_KRONA ( PROFILING.out.profiles )
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ch_versions = ch_versions.mix( VISUALIZATION_KRONA.out.versions )
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/*
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/*
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MODULE: MultiQC
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MODULE: MultiQC
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*/
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*/
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