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incorporate diamond log file into multiqc channel

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This commit is contained in:
mjamy 2022-07-19 14:12:16 +02:00
parent 035b4b7a17
commit c4c82212e1
1 changed files with 1 additions and 0 deletions
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subworkflows/local/profiling.nf
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@ -208,6 +208,7 @@ workflow PROFILING {
DIAMOND_BLASTX ( ch_input_for_diamond.reads, ch_input_for_diamond.db, ch_diamond_reads_format , [] ) DIAMOND_BLASTX ( ch_input_for_diamond.reads, ch_input_for_diamond.db, ch_diamond_reads_format , [] )
ch_versions = ch_versions.mix( DIAMOND_BLASTX.out.versions.first() ) ch_versions = ch_versions.mix( DIAMOND_BLASTX.out.versions.first() )
ch_raw_profiles = ch_raw_profiles.mix( DIAMOND_BLASTX.out.tsv ) ch_raw_profiles = ch_raw_profiles.mix( DIAMOND_BLASTX.out.tsv )
ch_multiqc_files = ch_multiqc_files.mix( DIAMOND_BLASTX.out.log.collect{it[1]}.ifEmpty([]) )
} }