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Final MQC fix for AR2 (remove too-early collect)
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@ -77,7 +77,7 @@ workflow SHORTREAD_ADAPTERREMOVAL {
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ch_versions = ch_versions.mix( ADAPTERREMOVAL_SINGLE.out.versions.first() )
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ch_versions = ch_versions.mix( ADAPTERREMOVAL_PAIRED.out.versions.first() )
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ch_multiqc_files = ch_multiqc_files.mix( ADAPTERREMOVAL_PAIRED.out.log.collect{it[1]}, ADAPTERREMOVAL_SINGLE.out.log.collect{it[1]} )
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ch_multiqc_files = ch_multiqc_files.mix( ADAPTERREMOVAL_PAIRED.out.log, ADAPTERREMOVAL_SINGLE.out.log )
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emit:
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reads = ch_processed_reads // channel: [ val(meta), [ reads ] ]
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