millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-21 22:16:05 +00:00
Code Issues Releases Packages Activity

Final MQC fix for AR2 (remove too-early collect)

Browse source
This commit is contained in:
James Fellows Yates 2022-04-03 07:28:01 +02:00
parent 02d950c58c
commit d3572e1878
1 changed files with 1 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
subworkflows/local/shortread_adapterremoval.nf
View file

@ -77,7 +77,7 @@ workflow SHORTREAD_ADAPTERREMOVAL {
ch_versions = ch_versions.mix( ADAPTERREMOVAL_SINGLE.out.versions.first() )
ch_versions = ch_versions.mix( ADAPTERREMOVAL_PAIRED.out.versions.first() )
ch_multiqc_files = ch_multiqc_files.mix( ADAPTERREMOVAL_PAIRED.out.log.collect{it[1]}, ADAPTERREMOVAL_SINGLE.out.log.collect{it[1]} )
ch_multiqc_files = ch_multiqc_files.mix( ADAPTERREMOVAL_PAIRED.out.log, ADAPTERREMOVAL_SINGLE.out.log )
emit:
reads = ch_processed_reads // channel: [ val(meta), [ reads ] ]