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Update gunzip

This commit is contained in:
James Fellows Yates 2023-05-02 14:06:00 +02:00
parent 2e980f1d15
commit dfb2e02eb3
3 changed files with 20 additions and 19 deletions

View file

@ -83,7 +83,7 @@
},
"gunzip": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"git_sha": "b9829e1064382745d8dff7f1d74d2138d2864f71",
"installed_by": ["modules"]
},
"kaiju/kaiju": {

View file

@ -5,7 +5,7 @@ process GUNZIP {
conda "conda-forge::sed=4.7"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
'ubuntu:20.04' }"
'docker.io/ubuntu:20.04' }"
input:
tuple val(meta), path(archive)

View file

@ -3,31 +3,32 @@ description: Compresses and decompresses files.
keywords:
- gunzip
- compression
- decompression
tools:
- gunzip:
description: |
gzip is a file format and a software application used for file compression and decompression.
documentation: https://www.gnu.org/software/gzip/manual/gzip.html
licence: ["GPL-3.0-or-later"]
description: |
gzip is a file format and a software application used for file compression and decompression.
documentation: https://www.gnu.org/software/gzip/manual/gzip.html
licence: ["GPL-3.0-or-later"]
input:
- meta:
type: map
description: |
Optional groovy Map containing meta information
e.g. [ id:'test', single_end:false ]
type: map
description: |
Optional groovy Map containing meta information
e.g. [ id:'test', single_end:false ]
- archive:
type: file
description: File to be compressed/uncompressed
pattern: "*.*"
type: file
description: File to be compressed/uncompressed
pattern: "*.*"
output:
- gunzip:
type: file
description: Compressed/uncompressed file
pattern: "*.*"
type: file
description: Compressed/uncompressed file
pattern: "*.*"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@joseespinosa"
- "@drpatelh"