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Merge branch 'dev' into update_motus

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Sofia Stamouli 2022-11-29 15:12:31 +01:00 committed by GitHub
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nextflow_schema.json
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@ -60,6 +60,14 @@
"description": "Common options across both long and short read preprocessing QC steps", "description": "Common options across both long and short read preprocessing QC steps",
"default": "", "default": "",
"properties": { "properties": {
"preprocessing_qc_tool": {
"type": "string",
"default": "fastqc",
"enum": ["fastqc", "falco"],
"help_text": "Falco is designed as a drop-in replacement for FastQC but written in C++ for faster computation. We particularly recommend using falco when using long reads (due to reduced memory constraints), however is also applicable for short reads.",
"description": "Specify the tool used for quality control of raw sequencing reads",
"fa_icon": "fas fa-tools"
},
"save_preprocessed_reads": { "save_preprocessed_reads": {
"type": "boolean", "type": "boolean",
"fa_icon": "fas fa-save", "fa_icon": "fas fa-save",