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Add description for MALT
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@ -440,8 +440,24 @@ Kraken2 allows the user to build custom databases. You can follow Kraken2 [tutor
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Centrifuge is similar to Kraken2 in that it enables to [build custom databases](https://ccb.jhu.edu/software/centrifuge/manual.shtml#custom-database).
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Centrifuge is similar to Kraken2 in that it enables to [build custom databases](https://ccb.jhu.edu/software/centrifuge/manual.shtml#custom-database).
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#### Kaiju
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#### Kaiju
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WIP
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It is possible to [create custom databases](https://github.com/bioinformatics-centre/kaiju#custom-database) with Kaiju.
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#### MALT
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To create a custom database for MALT, the user should download and unzip the following database which lists all NCBI records. The input files are specified using -i and the index is specified using -d. A detailed description for each argument can be found [here](https://software-ab.informatik.uni-tuebingen.de/download/malt/manual.pdf)
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```bash
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wget https://software-ab.informatik.uni-tuebingen.de/download/megan6/megan-nucl-Feb2022.db.zip
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unzip megan-nucl-Feb2022.db
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malt-build -i path/to/fasta/files/*.{fna,fa} -s DNA -d index -t 8 -st 4 -a2t megan-nucl-Feb2022.db
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```
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#### Bracken
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#### KrakenUniq
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#### DIAMOND
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#### mOTUs
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## Troubleshooting and FAQs
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## Troubleshooting and FAQs
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