millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-25 23:09:55 +00:00
Code Issues Releases Packages Activity

Update input_check.nf

Browse source
This commit is contained in:
James A. Fellows Yates 2022-04-18 07:35:19 +02:00 committed by GitHub
parent 9f634805e4
commit ecaff371aa
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 2 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
subworkflows/local/input_check.nf
View file

@ -45,6 +45,7 @@ def create_fastq_channel(LinkedHashMap row) {
meta.run_accession = row.run_accession meta.run_accession = row.run_accession
meta.instrument_platform = row.instrument_platform meta.instrument_platform = row.instrument_platform
meta.single_end = row.single_end.toBoolean() meta.single_end = row.single_end.toBoolean()
meta.is_fasta = false
// add path(s) of the fastq file(s) to the meta map // add path(s) of the fastq file(s) to the meta map
def fastq_meta = [] def fastq_meta = []
@ -75,6 +76,7 @@ def create_fasta_channel(LinkedHashMap row) {
meta.run_accession = row.run_accession meta.run_accession = row.run_accession
meta.instrument_platform = row.instrument_platform meta.instrument_platform = row.instrument_platform
meta.single_end = true meta.single_end = true
meta.is_fasta = true
def array = [] def array = []
if (!file(row.fasta).exists()) { if (!file(row.fasta).exists()) {