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Update input_check.nf

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James A. Fellows Yates 2022-04-18 07:35:19 +02:00 committed by GitHub
parent 9f634805e4
commit ecaff371aa
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subworkflows/local/input_check.nf
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@ -45,6 +45,7 @@ def create_fastq_channel(LinkedHashMap row) {
meta.run_accession = row.run_accession meta.run_accession = row.run_accession
meta.instrument_platform = row.instrument_platform meta.instrument_platform = row.instrument_platform
meta.single_end = row.single_end.toBoolean() meta.single_end = row.single_end.toBoolean()
meta.is_fasta = false
// add path(s) of the fastq file(s) to the meta map // add path(s) of the fastq file(s) to the meta map
def fastq_meta = [] def fastq_meta = []
@ -75,6 +76,7 @@ def create_fasta_channel(LinkedHashMap row) {
meta.run_accession = row.run_accession meta.run_accession = row.run_accession
meta.instrument_platform = row.instrument_platform meta.instrument_platform = row.instrument_platform
meta.single_end = true meta.single_end = true
meta.is_fasta = true
def array = [] def array = []
if (!file(row.fasta).exists()) { if (!file(row.fasta).exists()) {