mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-22 10:29:54 +00:00
Update input_check.nf
This commit is contained in:
parent
9f634805e4
commit
ecaff371aa
1 changed files with 2 additions and 0 deletions
|
@ -45,6 +45,7 @@ def create_fastq_channel(LinkedHashMap row) {
|
||||||
meta.run_accession = row.run_accession
|
meta.run_accession = row.run_accession
|
||||||
meta.instrument_platform = row.instrument_platform
|
meta.instrument_platform = row.instrument_platform
|
||||||
meta.single_end = row.single_end.toBoolean()
|
meta.single_end = row.single_end.toBoolean()
|
||||||
|
meta.is_fasta = false
|
||||||
|
|
||||||
// add path(s) of the fastq file(s) to the meta map
|
// add path(s) of the fastq file(s) to the meta map
|
||||||
def fastq_meta = []
|
def fastq_meta = []
|
||||||
|
@ -75,6 +76,7 @@ def create_fasta_channel(LinkedHashMap row) {
|
||||||
meta.run_accession = row.run_accession
|
meta.run_accession = row.run_accession
|
||||||
meta.instrument_platform = row.instrument_platform
|
meta.instrument_platform = row.instrument_platform
|
||||||
meta.single_end = true
|
meta.single_end = true
|
||||||
|
meta.is_fasta = true
|
||||||
|
|
||||||
def array = []
|
def array = []
|
||||||
if (!file(row.fasta).exists()) {
|
if (!file(row.fasta).exists()) {
|
||||||
|
|
Loading…
Reference in a new issue