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Apply suggestions from code review
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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@ -21,7 +21,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d
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- [Bowtie2](#bowtie2) - Host removal for Illumina reads
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- [minimap2](#minimap2) - Host removal for Nanopore reads
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- [SAMtools stats](#samtools-stats) - Statistics from host removal
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- [SAMtools bam2fq](#samtools-fastq) - Converts unmapped BAM file to fastq format (minimap2 only)
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- [SAMtools bam2fq](#samtools-bam2fq) - Converts unmapped BAM file to fastq format (minimap2 only)
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- [Bracken](#bracken) - Taxonomic classifier using k-mers and abundance estimations
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- [Kraken2](#kraken2) - Taxonomic classifier using exact k-mer matches
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- [KrakenUniq](#krakenuniq) - Taxonomic classifier that combines the k-mer-based classification and the number of unique k-mers found in each species
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@ -305,7 +305,7 @@ manifest {
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description = """Taxonomic classification and profiling of shotgun metagenomic data"""
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mainScript = 'main.nf'
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nextflowVersion = '!>=22.10.1'
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version = '1.0.0'
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version = '1.0.0'
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doi = ''
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}
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