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add krakenuniq to modules.config

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This commit is contained in:
Mahwash Jamy 2022-10-25 09:50:44 +00:00
parent 86ca71cfd4
commit f4717be9ab
1 changed files with 10 additions and 0 deletions
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10
conf/modules.config
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@ -295,6 +295,16 @@ process {
] ]
} }
withName: KRAKENUNIQ_PRELOADEDKRAKENUNIQ {
ext.args = { "${meta.db_params}" }
ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" }
publishDir = [
path: { "${params.outdir}/krakenuniq/${meta.db_name}/" },
mode: params.publish_dir_mode,
pattern: '*.{txt,report,fastq.gz}'
]
}
withName: KRONA_CLEANUP { withName: KRONA_CLEANUP {
ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" } ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" }
publishDir = [ publishDir = [