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Template update for nf-core/tools version 2.3.2
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.github/PULL_REQUEST_TEMPLATE.md
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.github/PULL_REQUEST_TEMPLATE.md
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@ -10,7 +10,6 @@ Remember that PRs should be made against the dev branch, unless you're preparing
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Learn more about contributing: [CONTRIBUTING.md](https://github.com/nf-core/taxprofiler/tree/master/.github/CONTRIBUTING.md)
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-->
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<!-- markdownlint-disable ul-indent -->
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## PR checklist
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.github/workflows/awsfulltest.yml
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@ -22,8 +22,6 @@ jobs:
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workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
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access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
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compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
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pipeline: ${{ github.repository }}
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revision: ${{ github.sha }}
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workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/taxprofiler/work-${{ github.sha }}
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parameters: |
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{
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.github/workflows/awstest.yml
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workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
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access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
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compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
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pipeline: ${{ github.repository }}
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revision: ${{ github.sha }}
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workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/taxprofiler/work-${{ github.sha }}
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parameters: |
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{
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@ -4,7 +4,7 @@ vscode:
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extensions: # based on nf-core.nf-core-extensionpack
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- codezombiech.gitignore # Language support for .gitignore files
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# - cssho.vscode-svgviewer # SVG viewer
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- davidanson.vscode-markdownlint # Markdown/CommonMark linting and style checking for Visual Studio Code
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- esbenp.prettier-vscode # Markdown/CommonMark linting and style checking for Visual Studio Code
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- eamodio.gitlens # Quickly glimpse into whom, why, and when a line or code block was changed
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- EditorConfig.EditorConfig # override user/workspace settings with settings found in .editorconfig files
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- Gruntfuggly.todo-tree # Display TODO and FIXME in a tree view in the activity bar
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@ -11,8 +11,6 @@ Initial release of nf-core/taxprofiler, created with the [nf-core](https://nf-co
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### `Fixed`
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- Clarified conda usage and added an installation tutorial for Singularity since the one on Syllabs' website uses an outdate version of GO Compiler
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### `Dependencies`
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### `Deprecated`
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