millironx/taxprofiler
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Code Issues Releases Packages Activity

Template update for nf-core/tools version 2.3.2

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nf-core-bot 2022-03-24 11:48:43 +00:00
parent 6b939e6728
commit feeb8ba8dd
5 changed files with 1 additions and 8 deletions
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1
.github/PULL_REQUEST_TEMPLATE.md vendored
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@ -10,7 +10,6 @@ Remember that PRs should be made against the dev branch, unless you're preparing
Learn more about contributing: [CONTRIBUTING.md](https://github.com/nf-core/taxprofiler/tree/master/.github/CONTRIBUTING.md) Learn more about contributing: [CONTRIBUTING.md](https://github.com/nf-core/taxprofiler/tree/master/.github/CONTRIBUTING.md)
--> -->
<!-- markdownlint-disable ul-indent -->
## PR checklist ## PR checklist

2
.github/workflows/awsfulltest.yml vendored
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@ -22,8 +22,6 @@ jobs:
workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
pipeline: ${{ github.repository }}
revision: ${{ github.sha }}
workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/taxprofiler/work-${{ github.sha }} workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/taxprofiler/work-${{ github.sha }}
parameters: | parameters: |
{ {

2
.github/workflows/awstest.yml vendored
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@ -17,8 +17,6 @@ jobs:
workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
pipeline: ${{ github.repository }}
revision: ${{ github.sha }}
workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/taxprofiler/work-${{ github.sha }} workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/taxprofiler/work-${{ github.sha }}
parameters: | parameters: |
{ {

2
.gitpod.yml
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@ -4,7 +4,7 @@ vscode:
extensions: # based on nf-core.nf-core-extensionpack extensions: # based on nf-core.nf-core-extensionpack
- codezombiech.gitignore # Language support for .gitignore files - codezombiech.gitignore # Language support for .gitignore files
# - cssho.vscode-svgviewer # SVG viewer # - cssho.vscode-svgviewer # SVG viewer
- davidanson.vscode-markdownlint # Markdown/CommonMark linting and style checking for Visual Studio Code - esbenp.prettier-vscode # Markdown/CommonMark linting and style checking for Visual Studio Code
- eamodio.gitlens # Quickly glimpse into whom, why, and when a line or code block was changed - eamodio.gitlens # Quickly glimpse into whom, why, and when a line or code block was changed
- EditorConfig.EditorConfig # override user/workspace settings with settings found in .editorconfig files - EditorConfig.EditorConfig # override user/workspace settings with settings found in .editorconfig files
- Gruntfuggly.todo-tree # Display TODO and FIXME in a tree view in the activity bar - Gruntfuggly.todo-tree # Display TODO and FIXME in a tree view in the activity bar

2
CHANGELOG.md
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@ -11,8 +11,6 @@ Initial release of nf-core/taxprofiler, created with the [nf-core](https://nf-co
### `Fixed` ### `Fixed`
- Clarified conda usage and added an installation tutorial for Singularity since the one on Syllabs' website uses an outdate version of GO Compiler
### `Dependencies` ### `Dependencies`
### `Deprecated` ### `Deprecated`