James A. Fellows Yates
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bca6e645a8
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Merge branch 'dev' into nf-core-template-merge-2.8
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1 year ago |
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nf-core-bot
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ac60d66956
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Template update for nf-core/tools version 2.8
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1 year ago |
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James A. Fellows Yates
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6dbeb5913a
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Remove left over skips
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1 year ago |
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James A. Fellows Yates
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54e8857233
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Reduce number of tests to check just each tool option is tested
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1 year ago |
|
James Fellows Yates
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6d9cdd3c78
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And the other file
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1 year ago |
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James A. Fellows Yates
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6c2ce4a1c9
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Apply suggestions from code review
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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1 year ago |
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James Fellows Yates
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5c549e5ce3
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Remove TODOs and references to under development
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1 year ago |
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James Fellows Yates
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2439aa69d0
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Use specific samplesheet for MALT without LR reads due to GHA memory limits
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1 year ago |
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Sofia Stamouli
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d691b89727
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Merge branch 'dev' into nf-core-template-merge-2.7.2
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1 year ago |
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nf-core-bot
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ab591e01ff
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Template update for nf-core/tools version 2.7.2
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1 year ago |
|
James Fellows Yates
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dca0b86c78
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Fix versions
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1 year ago |
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James Fellows Yates
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1ccd0a0767
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Merge branch 'dev' into nf-core-template-merge-2.7.1
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1 year ago |
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nf-core-bot
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36f3b5723b
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Template update for nf-core/tools version 2.7.1
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1 year ago |
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Moritz E. Beber
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4529e7e545
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refactor: change parameter exclude unmerged to include
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1 year ago |
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James Fellows Yates
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0a0dffa37c
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Try separating MALT
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1 year ago |
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James A. Fellows Yates
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ef1d2da179
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Apply suggestions from code review
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
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1 year ago |
|
James Fellows Yates
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bc98f5b80f
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Separate KrakenUniq test run
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1 year ago |
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Moritz E. Beber
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6b538d658a
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chore: let all tests run to completion
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2 years ago |
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Sofia Stamouli
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8c3e80b6ea
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Add helptest to nextflow_schema,add versions to longread_preprocessing
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2 years ago |
|
Sofia Stamouli
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511cb16a61
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Apply review suggestions
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2 years ago |
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Sofia Stamouli
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8eddb32b88
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Add Falco as an alternative to FastQC
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2 years ago |
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Moritz E. Beber
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fdb8a7f740
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Merge branch 'devel' into nf-core-template-merge-2.6
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2 years ago |
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nf-core-bot
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51bacb00e6
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Template update for nf-core/tools version 2.6
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2 years ago |
|
James A. Fellows Yates
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dd194f3f47
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Fix mOTUs CI and old param warn
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2 years ago |
|
James A. Fellows Yates
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331231ea28
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Standardise CI execution
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2 years ago |
|
James Fellows Yates
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c3427e44b3
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Try with retries from sarek approach
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2 years ago |
|
James Fellows Yates
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7917e1d656
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Synronise mOTUs CI setup
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2 years ago |
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James Fellows Yates
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55d7919fa7
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Revert "Update ci.yml"
This reverts commit 176a0a6280.
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2 years ago |
|
James Fellows Yates
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c479714a5e
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Revert "Update ci.yml"
This reverts commit 61560cf065.
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2 years ago |
|
James A. Fellows Yates
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61560cf065
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Update ci.yml
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2 years ago |
|
James A. Fellows Yates
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176a0a6280
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Update ci.yml
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2 years ago |
|
James A. Fellows Yates
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28d8d3f8fb
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Merge branch 'dev' into nf-core-template-merge-2.5
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2 years ago |
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nf-core-bot
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6dfca81761
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Template update for nf-core/tools version 2.5
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2 years ago |
|
JIANHONG OU
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713a341e09
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clean up ci.yml
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2 years ago |
|
JIANHONG OU
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9fa6ecad56
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debug for database csv file
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2 years ago |
|
JIANHONG OU
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3cd3d2dad3
|
prettier write .
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2 years ago |
|
JIANHONG OU
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22f65eedc7
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fix the download address for downloadDB for mOTUs.
|
2 years ago |
|
JIANHONG OU
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c8a59adbce
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remove the database auto-download for mOTUs.
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2 years ago |
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James A. Fellows Yates
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53c4399052
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Merge branch 'dev' into motus
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2 years ago |
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JIANHONG OU
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4d77b47e8d
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create a new test profile config for mOTUs.
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2 years ago |
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James Fellows Yates
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310ac6b450
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Merge branch 'dev' of github.com:nf-core/taxprofiler into add-filtlong
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2 years ago |
|
Moritz E. Beber
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a9fbe47992
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Merge branch 'dev' into nf-core-template-merge-2.4
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2 years ago |
|
nf-core-bot
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a560492353
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Template update for nf-core/tools version 2.4
|
2 years ago |
|
James Fellows Yates
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3fa2181f49
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Fix prinseq tool selection
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2 years ago |
|
James Fellows Yates
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031cb45934
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Add initial longread QC filtering - requires filtlong module update
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2 years ago |
|
James Fellows Yates
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aa2d07c42a
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Fix merge cockup
|
2 years ago |
|
James A. Fellows Yates
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70f94603b0
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Merge branch 'dev' into hostremoval
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2 years ago |
|
James Fellows Yates
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dfeaa0d1fe
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Rename subworkflow parameters for consistency
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2 years ago |
|
James Fellows Yates
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29073e3c93
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Update CI tests
|
2 years ago |
|
James Fellows Yates
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d130a72d74
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Get this working
|
2 years ago |