James A. Fellows Yates
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6c2ce4a1c9
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Apply suggestions from code review
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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1 year ago |
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James Fellows Yates
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5c549e5ce3
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Remove TODOs and references to under development
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1 year ago |
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James Fellows Yates
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7ce55a99e8
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Fix linting
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1 year ago |
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James A. Fellows Yates
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c4e366d47d
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Add full test data and documentation of the test data
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1 year ago |
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Mahwash Jamy
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aecf308840
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Update documentation for krakenuniq
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2 years ago |
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Moritz E. Beber
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bf89525bc2
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Merge pull request #146 from nf-core/feat-bracken
add Bracken to the profiling workflow
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2 years ago |
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Moritz E. Beber
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0de1ac5356
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docs: add Bracken reference
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2 years ago |
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Sofia Stamouli
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511cb16a61
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Apply review suggestions
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2 years ago |
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Sofia Stamouli
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8eddb32b88
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Add Falco as an alternative to FastQC
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2 years ago |
 Thomas A. Christensen II
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15ac8b39fa
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Add citation for Krona
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2 years ago |
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James Fellows Yates
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031cb45934
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Add initial longread QC filtering - requires filtlong module update
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2 years ago |
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James Fellows Yates
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8126d16dee
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Add draft version of DIAMOND
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2 years ago |
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James Fellows Yates
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cc73cdd51d
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Add generation of taxon-table like output for MALT
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2 years ago |
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James A. Fellows Yates
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3d662d2e06
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Merge branch 'dev' into complexity-filter-bbduk
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2 years ago |
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James Fellows Yates
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a384162810
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Add prinseq as alternative complexity filtering
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2 years ago |
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James Fellows Yates
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b055df5ea0
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Add bbduk complexity (entropy-based) filtering
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2 years ago |
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Moritz E. Beber
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562fa42696
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fix: remove duplicate porechop entry
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2 years ago |
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Moritz E. Beber
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95ed86516b
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chore: add citation
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2 years ago |
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James Fellows Yates
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df4f13319f
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More linting
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2 years ago |
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James Fellows Yates
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b04cfec2c2
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Prettier linting
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2 years ago |
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James A. Fellows Yates
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edce6603ef
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Merge branch 'dev' into nf-core-template-merge-2.3.2
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2 years ago |
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nf-core-bot
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6b939e6728
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Template update for nf-core/tools version 2.3.1
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2 years ago |
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ljmesi
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d09a3c170e
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Add Porechop
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2 years ago |
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James Fellows Yates
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12e7b428f2
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initial template build from nf-core/tools, version 2.2
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2 years ago |