James A. Fellows Yates
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ea76a97d99
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Merge branch 'dev' into post-patch-update
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1 year ago |
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James Fellows Yates
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2263d96e73
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Merge remote-tracking branch 'origin/master' into post-patch-update
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1 year ago |
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James Fellows Yates
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1ef8119c59
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Linting fixes deactivate accidental re-included function
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1 year ago |
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James A. Fellows Yates
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bca6e645a8
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Merge branch 'dev' into nf-core-template-merge-2.8
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1 year ago |
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nf-core-bot
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ac60d66956
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Template update for nf-core/tools version 2.8
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1 year ago |
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nf-core-bot
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386b1c9dfd
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[automated] Fix linting with Prettier
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1 year ago |
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James A. Fellows Yates
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d06ac3713d
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Update README.md
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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1 year ago |
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James A. Fellows Yates
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f476b49d29
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Add team sectionb
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1 year ago |
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James A. Fellows Yates
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c3f1adf09b
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First release Zenodo update
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1 year ago |
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James A. Fellows Yates
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9550c76c25
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Update README.md
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1 year ago |
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James A. Fellows Yates
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6266ee782d
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Update README.md
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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1 year ago |
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James Fellows Yates
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95f9bf1fa9
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Update credits section
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1 year ago |
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Alex Hübner
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f92a405554
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Update README.md
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1 year ago |
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James Fellows Yates
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5c549e5ce3
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Remove TODOs and references to under development
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1 year ago |
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James A. Fellows Yates
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c4e366d47d
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Add full test data and documentation of the test data
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1 year ago |
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James A. Fellows Yates
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b34a021db7
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Specify the difference between classification/profiling
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1 year ago |
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James Fellows Yates
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4b68e95770
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Revert PEP validation back to python samplesheet check
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1 year ago |
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James Fellows Yates
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da3d2d96e6
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Fix linting
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1 year ago |
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James Fellows Yates
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1ccd0a0767
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Merge branch 'dev' into nf-core-template-merge-2.7.1
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1 year ago |
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nf-core-bot
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36f3b5723b
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Template update for nf-core/tools version 2.7.1
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1 year ago |
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Sofia Stamouli
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696edfb866
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Apply prettier
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2 years ago |
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Sofia Stamouli
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79dd3930bb
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Add samtools to README
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2 years ago |
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Sofia Stamouli
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511cb16a61
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Apply review suggestions
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2 years ago |
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Sofia Stamouli
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8eddb32b88
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Add Falco as an alternative to FastQC
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2 years ago |
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Sofia Stamouli
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bd56bc0ed6
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Add minimap2 and update contributors
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2 years ago |
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Sofia Stamouli
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35b7fc26f7
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[skip ci]
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2 years ago |
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Sofia Stamouli
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f24344c168
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Update README.md
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2 years ago |
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Sofia Stamouli
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dea45c66c2
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Add Krona description
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2 years ago |
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Sofia Stamouli
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58dffc0c5d
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Add KrakenUniq and Filtlong in documentation
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2 years ago |
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James A. Fellows Yates
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3ca9058b9c
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Merge pull request #133 from rafalstepien/add-pep-support
Add working version of PEP-nf-core integration
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2 years ago |
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Rafal Stepien
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9349346864
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Remove --pep parameter and leave just --input
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2 years ago |
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Rafal Stepien
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768f9980d8
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Add pep_input_base_dir to workflow. Just need to update modules
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2 years ago |
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James A. Fellows Yates
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23a33a63cc
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Update README.md
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2 years ago |
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Rafal Stepien
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5f3eee9a4a
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Add working version of PEP-nf-core integration
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2 years ago |
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James Fellows Yates
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175be0075a
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Add tube map
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2 years ago |
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James A. Fellows Yates
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28d8d3f8fb
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Merge branch 'dev' into nf-core-template-merge-2.5
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2 years ago |
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nf-core-bot
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6dfca81761
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Template update for nf-core/tools version 2.5
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2 years ago |
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James Fellows Yates
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77da358e87
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Separate dark and light mode logos, add to README and add to MQC report
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2 years ago |
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Moritz E. Beber
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a9fbe47992
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Merge branch 'dev' into nf-core-template-merge-2.4
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2 years ago |
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nf-core-bot
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a560492353
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Template update for nf-core/tools version 2.4
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2 years ago |
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sofstam
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6736a2a980
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Update README.md, nextflow_schema.json
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2 years ago |
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James A. Fellows Yates
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b8b11fd065
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Apply suggestions from code review
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
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2 years ago |
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James Fellows Yates
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b892fd0be5
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Initial attempt at docs
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2 years ago |
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James A. Fellows Yates
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fafb7e0f6f
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Update README.md
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2 years ago |
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James Fellows Yates
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203cd2e7d3
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Prettier
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2 years ago |
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James A. Fellows Yates
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edce6603ef
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Merge branch 'dev' into nf-core-template-merge-2.3.2
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2 years ago |
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nf-core-bot
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6b939e6728
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Template update for nf-core/tools version 2.3.1
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2 years ago |
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ljmesi
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4940ec57ff
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Remove unnecessary extra point
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2 years ago |
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ljmesi
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24a01529f5
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Add mentioning about Nanopore reads pre-processing
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2 years ago |
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James A. Fellows Yates
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424f11f5ed
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Update README.md
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2 years ago |