James Fellows Yates
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33a5402b25
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Add emitting porechop logs to multiqc and fix collection of others
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2022-07-19 13:50:39 +02:00 |
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James A. Fellows Yates
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26e31c782d
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Merge branch 'dev' into motus
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2022-07-04 13:14:42 +02:00 |
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James Fellows Yates
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4552b53e75
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Add note about MALT version to docs
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2022-06-20 08:30:23 +02:00 |
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James Fellows Yates
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6c6f5e0913
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Merge branch 'dev' of github.com:nf-core/taxprofiler into dev
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2022-06-09 08:21:51 +02:00 |
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James Fellows Yates
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ec13b8d608
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Remove support for uncompressed FASTQ files
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2022-06-09 08:21:48 +02:00 |
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James A. Fellows Yates
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dc48935651
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Apply suggestions from code review
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2022-06-07 20:19:45 +02:00 |
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JIANHONG OU
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c8a59adbce
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remove the database auto-download for mOTUs.
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2022-06-03 14:13:58 -04:00 |
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James A. Fellows Yates
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53c4399052
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Merge branch 'dev' into motus
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2022-06-02 21:38:35 +02:00 |
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James A. Fellows Yates
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a196e0f628
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Merge branch 'dev' into add-filtlong
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2022-06-02 11:51:26 +02:00 |
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JIANHONG OU
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4d77b47e8d
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create a new test profile config for mOTUs.
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2022-05-31 08:47:38 -04:00 |
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James Fellows Yates
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310ac6b450
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Merge branch 'dev' of github.com:nf-core/taxprofiler into add-filtlong
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2022-05-31 13:05:52 +02:00 |
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James Fellows Yates
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77da358e87
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Separate dark and light mode logos, add to README and add to MQC report
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2022-05-31 12:45:38 +02:00 |
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ZandraFagernas
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74b48f0919
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Add files via upload
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2022-05-28 13:29:24 +02:00 |
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James A. Fellows Yates
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d67543503b
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Apply suggestions from code review
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
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2022-05-07 13:15:21 +02:00 |
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James Fellows Yates
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47a5ae0cff
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Add FASTP complexity option
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2022-05-07 06:09:05 +02:00 |
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Lauri Mesilaakso
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02517733aa
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Update docs/usage.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-06 10:40:59 +02:00 |
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ljmesi
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6618e8cac6
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Change param to a more generic name
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2022-05-05 13:20:34 +02:00 |
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ljmesi
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557d31dfd2
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Add parameter for turning on longread host removal
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2022-05-05 13:19:10 +02:00 |
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James Fellows Yates
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031cb45934
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Add initial longread QC filtering - requires filtlong module update
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2022-05-01 07:18:14 +02:00 |
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James Fellows Yates
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a4a9b161d8
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Lintin
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2022-04-29 22:02:44 +02:00 |
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James Fellows Yates
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8126d16dee
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Add draft version of DIAMOND
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2022-04-29 21:59:42 +02:00 |
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Sofia Stamouli
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236141f065
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Resolve conflicts with dev
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2022-04-20 10:17:10 +02:00 |
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James A. Fellows Yates
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ac714dd30f
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Apply suggestions from code review
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
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2022-04-20 09:22:10 +02:00 |
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sofstam
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1b7ff2265d
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Update usage.md, reformat test.config and modules.config
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2022-04-19 13:04:58 +02:00 |
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James Fellows Yates
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457c13e8b7
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Add additional tips for host removal
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2022-04-17 17:55:23 +02:00 |
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James Fellows Yates
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818d3bd053
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Complete documentation for preprocessing subworkflows
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2022-04-17 17:53:22 +02:00 |
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James A. Fellows Yates
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b8b11fd065
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Apply suggestions from code review
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
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2022-04-11 10:30:29 +02:00 |
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James Fellows Yates
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b892fd0be5
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Initial attempt at docs
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2022-04-10 22:17:44 +02:00 |
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James A. Fellows Yates
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edce6603ef
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Merge branch 'dev' into nf-core-template-merge-2.3.2
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2022-03-24 14:10:58 +01:00 |
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nf-core-bot
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6b939e6728
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Template update for nf-core/tools version 2.3.1
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2022-03-23 13:57:56 +00:00 |
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ljmesi
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2e1b6c5d0a
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Add info on Nanopore reads to fastq_1 column
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2022-03-18 11:00:36 +01:00 |
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nf-core-bot
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699d26b149
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Template update for nf-core/tools version 2.3
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2022-03-15 21:05:37 +00:00 |
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James Fellows Yates
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12e7b428f2
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initial template build from nf-core/tools, version 2.2
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2022-02-18 07:55:14 +01:00 |
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