millironx/taxprofiler
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357 commits 7 branches 0 tags 7.5 MiB
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25 commits

Author SHA1 Message Date
JIANHONG OU
713a341e09 clean up ci.yml 2022-06-03 15:22:33 -04:00
JIANHONG OU
9fa6ecad56 debug for database csv file 2022-06-03 14:50:03 -04:00
JIANHONG OU
3cd3d2dad3 prettier write . 2022-06-03 14:38:59 -04:00
JIANHONG OU
22f65eedc7 fix the download address for downloadDB for mOTUs. 2022-06-03 14:16:25 -04:00
JIANHONG OU
c8a59adbce remove the database auto-download for mOTUs. 2022-06-03 14:13:58 -04:00
James A. Fellows Yates
53c4399052
Merge branch 'dev' into motus 2022-06-02 21:38:35 +02:00
JIANHONG OU
4d77b47e8d create a new test profile config for mOTUs. 2022-05-31 08:47:38 -04:00
James Fellows Yates
310ac6b450 Merge branch 'dev' of github.com:nf-core/taxprofiler into add-filtlong 2022-05-31 13:05:52 +02:00
Moritz E. Beber
a9fbe47992
Merge branch 'dev' into nf-core-template-merge-2.4 2022-05-19 08:42:28 +02:00
nf-core-bot
a560492353 Template update for nf-core/tools version 2.4 2022-05-16 10:22:38 +00:00
James Fellows Yates
3fa2181f49 Fix prinseq tool selection 2022-05-07 06:15:15 +02:00
James Fellows Yates
031cb45934 Add initial longread QC filtering - requires filtlong module update 2022-05-01 07:18:14 +02:00
James Fellows Yates
aa2d07c42a Fix merge cockup 2022-04-13 14:19:19 +02:00
James A. Fellows Yates
70f94603b0
Merge branch 'dev' into hostremoval 2022-04-13 13:59:51 +02:00
James Fellows Yates
dfeaa0d1fe Rename subworkflow parameters for consistency 2022-04-13 12:00:28 +02:00
James Fellows Yates
29073e3c93 Update CI tests 2022-04-11 13:38:42 +02:00
James Fellows Yates
d130a72d74 Get this working 2022-04-08 13:09:23 +02:00
James Fellows Yates
7b08c49cd6 Re-add run merging and gonna let GHA see if it works >.> 2022-04-08 11:54:54 +02:00
James Fellows Yates
d46ddd972c Expand tests and fix schema after review 2022-04-05 11:04:30 +02:00
Moritz E. Beber
41526e8a64 try to fix locale 2022-04-02 15:44:39 +02:00
James Fellows Yates
0d0b377dfb Add additional test 2022-04-01 11:19:00 +02:00
nf-core-bot
feeb8ba8dd Template update for nf-core/tools version 2.3.2 2022-03-24 11:48:43 +00:00
nf-core-bot
6b939e6728 Template update for nf-core/tools version 2.3.1 2022-03-23 13:57:56 +00:00
nf-core-bot
699d26b149 Template update for nf-core/tools version 2.3 2022-03-15 21:05:37 +00:00
James Fellows Yates
12e7b428f2 initial template build from nf-core/tools, version 2.2 2022-02-18 07:55:14 +01:00