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933 commits 7 branches 0 tags 7.5 MiB
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23 commits

Author SHA1 Message Date
James Fellows Yates
9ed384e0f2 Collapse FALCO and FASTQC sections, move FALCO/FASTQC sections together 2023-03-06 10:37:09 +01:00
James Fellows Yates
1f1c63bb51 Start fixing FastQC/Falco display in MultiQC 2023-03-06 09:47:26 +01:00
James Fellows Yates
01fca90496 Tweak MultiQC config [skip ci] 2023-01-31 11:08:46 +01:00
James Fellows Yates
bdbb111344 Turn off all profilers in generla stats 2023-01-24 15:08:28 +01:00
James Fellows Yates
a993300099 Tweaks to MultiQC based on full test experiments 2023-01-24 15:06:42 +01:00
James Fellows Yates
92dff9b453 Standardise file names using only underscore 2023-01-17 10:58:30 +01:00
James Fellows Yates
480248bcfd Deactivate all classifer columns from general stats 2023-01-17 10:33:35 +01:00
James Fellows Yates
0947e9b8ca Fix mOTUs issues 2023-01-16 15:09:30 +01:00
James Fellows Yates
d6fa45b500 update MultiQC and include latest modules 2023-01-16 14:39:52 +01:00
Sofia Stamouli
07a1cfae62
Update assets/multiqc_config.yml 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-16 11:46:42 +01:00
Sofia Stamouli
5a592f086e
Update assets/multiqc_config.yml 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-16 11:46:35 +01:00
Sofia Stamouli
a2c81e33fd Prettier 2022-12-16 08:38:58 +01:00
Sofia Stamouli
d6db04503e
Configuration of multiqc report 2022-12-15 17:04:45 +01:00
Sofia Stamouli
1bd6dbfe58 Add samtools stats for long-reads 2022-10-28 11:40:50 +02:00
Moritz E. Beber
fdb8a7f740 Merge branch 'devel' into nf-core-template-merge-2.6 2022-10-05 12:21:54 +02:00
nf-core-bot
51bacb00e6 Template update for nf-core/tools version 2.6 2022-10-05 03:30:53 +00:00
James Fellows Yates
a97bb69cd2 Prettier 2022-08-23 14:24:57 +02:00
James Fellows Yates
25bcc0798d Start work on multiQC config with distinguishing Kraken/Centrifuge 2022-07-27 14:40:17 +02:00
nf-core-bot
a3bcf8665a [automated] Fix linting with Prettier 2022-07-26 18:47:40 +00:00
James A. Fellows Yates
65ae82efc4 Define separte krakena nd centrigfue modules 2022-07-26 18:37:33 +00:00
James A. Fellows Yates
e76b299705 Start working getting kraken and centrifuge working in MQC 2022-07-26 08:18:54 +00:00
James Fellows Yates
77da358e87 Separate dark and light mode logos, add to README and add to MQC report 2022-05-31 12:45:38 +02:00
nf-core-bot
6b939e6728 Template update for nf-core/tools version 2.3.1 2022-03-23 13:57:56 +00:00