ljmesi
|
24a01529f5
|
Add mentioning about Nanopore reads pre-processing
|
2022-03-18 15:47:46 +01:00 |
|
ljmesi
|
d09a3c170e
|
Add Porechop
|
2022-03-18 15:46:03 +01:00 |
|
ljmesi
|
582aaa105f
|
Include long reads preprocessing subworkflow
|
2022-03-18 15:12:07 +01:00 |
|
ljmesi
|
1e42f1d9f2
|
Add long read preprocessing subworkflow
|
2022-03-18 15:10:44 +01:00 |
|
ljmesi
|
16be676d72
|
Add Porechop module
|
2022-03-18 14:34:10 +01:00 |
|
James A. Fellows Yates
|
b23fb927a9
|
Merge pull request #26 from genomic-medicine-sweden/add_nanopore
Perform fastqc on nanopore reads before trimming
|
2022-03-18 14:22:54 +01:00 |
|
Lauri Mesilaakso
|
0936b9b28e
|
Update workflows/taxprofiler.nf
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2022-03-18 14:18:38 +01:00 |
|
ljmesi
|
c8e49c56f4
|
Perform fastqc on nanopore reads before trimming
|
2022-03-18 13:47:44 +01:00 |
|
James A. Fellows Yates
|
45428c2877
|
Merge pull request #24 from genomic-medicine-sweden/add_nanopore
Add nanopore reads input
|
2022-03-18 13:29:13 +01:00 |
|
ljmesi
|
2e1b6c5d0a
|
Add info on Nanopore reads to fastq_1 column
|
2022-03-18 11:00:36 +01:00 |
|
ljmesi
|
7f7ddc9f14
|
Update comment
|
2022-03-18 10:48:06 +01:00 |
|
ljmesi
|
41b3d8db82
|
Add nanopore channel
|
2022-03-18 10:47:41 +01:00 |
|
ljmesi
|
0f0ed6cd46
|
Fix function name
|
2022-03-18 10:45:06 +01:00 |
|
James A. Fellows Yates
|
9fac82d342
|
Merge pull request #19 from nf-core/nf-core-template-merge-2.3
Important! Template update for nf-core/tools v2.3
|
2022-03-17 13:18:29 +01:00 |
|
James A. Fellows Yates
|
424f11f5ed
|
Update README.md
|
2022-03-17 13:16:16 +01:00 |
|
James A. Fellows Yates
|
ac77676d2b
|
Merge branch 'dev' into nf-core-template-merge-2.3
|
2022-03-17 13:11:34 +01:00 |
|
nf-core-bot
|
699d26b149
|
Template update for nf-core/tools version 2.3
|
2022-03-15 21:05:37 +00:00 |
|
James Fellows Yates
|
e39c6a8ccb
|
Fix MALT multiqc report clash
|
2022-03-03 18:04:03 +01:00 |
|
James Fellows Yates
|
2c183ed2ed
|
Add Kraken2 and MALT/run as Proof of Concept (currnetly MQC issue)
|
2022-03-03 17:42:02 +01:00 |
|
James Fellows Yates
|
278f5605ca
|
Added database preparation and final channel for profiling
|
2022-02-19 12:36:08 +01:00 |
|
James Fellows Yates
|
cf55cc592c
|
Get skeleton read processing to input for profiling
|
2022-02-18 16:51:01 +01:00 |
|
maxibor
|
1b893cb039
|
add check for fastq with fasta
|
2022-02-18 13:27:10 +01:00 |
|
maxibor
|
a6cfa0a1ba
|
cleanup
|
2022-02-18 13:15:30 +01:00 |
|
maxibor
|
54a1a4fd45
|
update samplesheet specs
|
2022-02-18 13:11:18 +01:00 |
|
maxibor
|
1aba3ed01c
|
Merge remote-tracking branch 'origin/dev' into dev
|
2022-02-18 11:53:52 +01:00 |
|
maxibor
|
f867c057a4
|
add more columns to samplesheet
|
2022-02-18 11:53:13 +01:00 |
|
James A. Fellows Yates
|
c68afbbf90
|
Update nextflow.config
|
2022-02-18 08:45:06 +01:00 |
|
James Fellows Yates
|
7321daf4f6
|
Update README with approximate pipeline outline
|
2022-02-18 08:41:34 +01:00 |
|
James Fellows Yates
|
12e7b428f2
|
initial template build from nf-core/tools, version 2.2
|
2022-02-18 07:55:14 +01:00 |
|