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nf-core/taxprofiler: Changelog
The format is based on Keep a Changelog and this project adheres to Semantic Versioning.
v1.1.0dev - [date]
Added
- #276 Implemented batching in the KrakenUniq samples processing. (added by @Midnighter)
- #272 - Add saving of final 'analysis-ready-reads' to dedicated directory. (❤️ to @alexhbnr for reporting, added by @jfy133)
Fixed
- #271 Improved standardised table generation documentation nd mOTUs manual database download tutorial (♥ to @prototaxites for reporting, fix by @jfy133)
- #269 Reduced output files in AWS full test output due to very large files
- #270 Fixed warning for host removal index parameter, and improved index checks (♥ to @prototaxites for reporting, fix by @jfy133)
- #274 Substituted the samtools/bam2fq module with samtools/fastq module (fix by @sofstam)
- #275 Replaced function used for error reporting to more Nextflow friendly method (fix by @jfy133)
- #285 Fixed overly large log files in Kraken2 output (♥ to @prototaxites for reporting, fix by @Midnighter & @jfy133)
- #286 Runtime optimisation of MultiQC step via improved log file processing (fix by @Midnighter & @jfy133)
- #289 Pipeline updated to nf-core template 2.8 (fix by @Midnighter & @jfy133)
Dependencies
| Tool | Previous version | New version |
|---|---|---|
| MultiQC | 1.13 | 1.14 |
Deprecated
v1.0.0 - Dodgy Dachshund [2023-03-13]
Initial release of nf-core/taxprofiler, created with the nf-core template.
- Add read quality control (sequencing QC, adapter removal and merging)
- Add read complexity filtering
- Add host-reads removal step
- Add run merging
- Add taxonomic classification
- Add taxon table standardisation
- Add post-classification visualisation