mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-14 17:43:09 +00:00
33 lines
884 B
Text
Generated
33 lines
884 B
Text
Generated
process MINIMAP2_INDEX {
|
|
label 'process_medium'
|
|
|
|
conda (params.enable_conda ? 'bioconda::minimap2=2.21' : null)
|
|
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
|
|
'https://depot.galaxyproject.org/singularity/minimap2:2.21--h5bf99c6_0' :
|
|
'quay.io/biocontainers/minimap2:2.21--h5bf99c6_0' }"
|
|
|
|
input:
|
|
tuple val(meta), path(fasta)
|
|
|
|
output:
|
|
tuple val(meta), path("*.mmi"), emit: index
|
|
path "versions.yml" , emit: versions
|
|
|
|
when:
|
|
task.ext.when == null || task.ext.when
|
|
|
|
script:
|
|
def args = task.ext.args ?: ''
|
|
"""
|
|
minimap2 \\
|
|
-t $task.cpus \\
|
|
-d ${fasta.baseName}.mmi \\
|
|
$args \\
|
|
$fasta
|
|
|
|
cat <<-END_VERSIONS > versions.yml
|
|
"${task.process}":
|
|
minimap2: \$(minimap2 --version 2>&1)
|
|
END_VERSIONS
|
|
"""
|
|
}
|