James Fellows Yates d4af88e3ff Make kaiju parameter clearer for documentation purpses and update documentation		2022-08-25 15:50:28 +02:00
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db_check.nf	remove the database auto-download for mOTUs.	2022-06-03 14:13:58 -04:00
input_check.nf	Update input_check.nf	2022-04-18 07:35:19 +02:00
longread_hostremoval.nf	Implement hostremoval	2022-05-03 09:34:27 +02:00
longread_preprocessing.nf	Apply suggestions from code review	2022-07-29 09:52:49 +02:00
profiling.nf	Make kaiju parameter clearer for documentation purpses and update documentation	2022-08-25 15:50:28 +02:00
shortread_adapterremoval.nf	Add initial longread QC filtering - requires filtlong module update	2022-05-01 07:18:14 +02:00
shortread_complexityfiltering.nf	Add FASTP complexity option	2022-05-07 06:09:05 +02:00
shortread_fastp.nf	Add initial longread QC filtering - requires filtlong module update	2022-05-01 07:18:14 +02:00
shortread_hostremoval.nf	Remove flagstat as bowtie2 reports this itself	2022-04-03 17:23:14 +02:00
shortread_preprocessing.nf	Add initial longread QC filtering - requires filtlong module update	2022-05-01 07:18:14 +02:00
standardisation_profiles.nf	Add motus/merge and biom support	2022-07-12 11:39:26 +02:00
visualization_krona.nf	Add motus/merge and biom support	2022-07-12 11:39:26 +02:00