85 lines
2.6 KiB
Text
85 lines
2.6 KiB
Text
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nextflow_process {
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name "Test Process MULTIQC"
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script "../main.nf"
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process "MULTIQC"
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tag "modules"
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tag "modules_nfcore"
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tag "multiqc"
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test("sarscov2 single-end [fastqc]") {
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when {
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process {
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"""
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input[0] = Channel.of(file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fastqc/test_fastqc.zip', checkIfExists: true))
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input[1] = []
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input[2] = []
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input[3] = []
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"""
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}
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}
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then {
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assertAll(
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{ assert process.success },
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{ assert process.out.report[0] ==~ ".*/multiqc_report.html" },
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{ assert process.out.data[0] ==~ ".*/multiqc_data" },
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{ assert snapshot(process.out.versions).match("multiqc_versions_single") }
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)
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}
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}
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test("sarscov2 single-end [fastqc] [config]") {
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when {
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process {
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"""
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input[0] = Channel.of(file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fastqc/test_fastqc.zip', checkIfExists: true))
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input[1] = Channel.of(file("https://github.com/nf-core/tools/raw/dev/nf_core/pipeline-template/assets/multiqc_config.yml", checkIfExists: true))
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input[2] = []
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input[3] = []
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"""
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}
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}
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then {
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assertAll(
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{ assert process.success },
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{ assert process.out.report[0] ==~ ".*/multiqc_report.html" },
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{ assert process.out.data[0] ==~ ".*/multiqc_data" },
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{ assert snapshot(process.out.versions).match("multiqc_versions_config") }
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)
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}
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}
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test("sarscov2 single-end [fastqc] - stub") {
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options "-stub"
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when {
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process {
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"""
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input[0] = Channel.of(file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fastqc/test_fastqc.zip', checkIfExists: true))
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input[1] = []
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input[2] = []
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input[3] = []
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"""
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}
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}
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then {
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assertAll(
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{ assert process.success },
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{ assert snapshot(process.out.report.collect { file(it).getName() } +
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process.out.data.collect { file(it).getName() } +
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process.out.plots.collect { file(it).getName() } +
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process.out.versions ).match("multiqc_stub") }
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)
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}
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}
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}
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