14 commits

Author	SHA1	Message	Date
Thomas A. Christensen II	b870007826	Add test for reconstruct function	2023-01-10 11:22:06 -06:00
Thomas A. Christensen II	5839de3ce1	Rename Variant type to Haplotype	2023-01-05 11:58:29 -06:00
Thomas A. Christensen II	d29764d2bc	Apply Blue style to tests file	2023-01-04 11:56:45 -06:00
Thomas A. Christensen II	cb53defe9a	Add Aqua tests	2023-01-04 11:56:45 -06:00
Thomas A. Christensen II	f9e76d60d6	Add test for ending substitutions being invalid	2022-12-17 22:02:15 +00:00
Thomas A. Christensen II	3b61ccefb5	Add test for ending insertion	2022-12-17 22:02:15 +00:00
Thomas A. Christensen II	abff6692d4	Add test for combined clips	2022-12-17 22:02:15 +00:00
Thomas A. Christensen II	dd00231840	Add test for soft clips	2022-12-17 22:02:15 +00:00
Thomas A. Christensen II	1bbb85153c	Add constructor for Variant based on Variations ... A Variant is a collection of Variations, right? Unfortunately there was no way to convert a collection of Variations into a Variant, so I added one.	2022-07-21 12:33:35 +00:00
Thomas A. Christensen II	97e1d193a6	Add VCF spec tests for reference and alternate bases	2022-07-13 16:50:00 -05:00
Thomas A. Christensen II	36cbd5abb9	Add tests for variations function	2022-07-05 09:10:02 -05:00
Thomas A. Christensen II	6bc1528d18	Add tests for Variation parsing	2022-06-14 16:24:55 -05:00
Thomas A. Christensen II	ade9b7e41d	Fix inconsistent Variation positions (#4) ... * Change Variant constructor to use alignment positions Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com> * Add test for positions of Variations Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>	2022-05-06 12:26:49 +02:00
Jakob Nybo Nissen	92a2d40553	Implement translate	2022-01-26 14:59:19 +01:00