millironx/XAM.jl
1
0
Fork 0
mirror of https://github.com/MillironX/XAM.jl.git synced 2024-12-23 13:28:16 +00:00
Code Issues Releases Packages Activity
95 commits 21 branches 10 tags 2.5 MiB
Commit graph

95 commits

This branch
This branch
All branches
Author SHA1 Message Date
Ciarán O’Mara
9d2a70531a Return early 2021-07-06 14:47:43 +10:00
Ciarán O’Mara
8f26bbf4a7 Tidy state machines and improve error messages 
Makes better use of the existing flow in [Automa.jl](b6997f7415/src/Stream.jl (L124-L127)).
 2021-06-29 13:25:30 +10:00
Ciarán O’Mara
fa10f3bfcf Readability 2021-06-29 13:23:00 +10:00
Ciarán O’Mara
c56eb0851a Update Continuous Integration workflows 
- Includes doctest in tests.
 2021-06-29 13:23:00 +10:00
Ciarán O’Mara
5bd793bc5f Merge branch 'master' into develop 2021-04-01 12:37:54 +11:00
Ciarán O’Mara
22667dc7af Merge branch 'hotfix/issue-34' 2021-04-01 12:37:54 +11:00
Ciarán O’Mara
c423694f29 Cater for blank sam files 2021-04-01 12:37:35 +11:00
Ciarán O’Mara
64f371e1e4 Adjust for Automa 0.8.1 
Defines an unambiguous state machine.
https://github.com/BioJulia/Automa.jl/pull/49.
 2021-04-01 12:37:35 +11:00
Ciarán O’Mara
aaf3710fbe Increment version 2021-03-27 00:28:44 +11:00
Jakob Nissen
b086fefbd5 Make BAM record layout match BAM specs 2020-10-20 01:52:31 +11:00
Ciarán O'Mara
8836b4dbb6
Merge pull request #29 from CiaranOMara/feature/crosscheck 
Begin crosschecks
 2020-10-20 01:50:13 +11:00
Ciarán O'Mara
d38c2becf0 Minimal adjustements 2020-08-13 16:45:53 +10:00
Ciarán O'Mara
433b8d14e8 Begin crosschecks 2020-08-13 16:45:51 +10:00
Jonathan Bieler
dde235fbc8 improve BAM.quality performance 2020-08-02 17:40:52 +10:00
Ciarán O'Mara
dce44b3f55 Tidy 2020-07-08 23:30:44 +10:00
Ciarán O'Mara
69e77a234c Note 2020-07-08 23:30:44 +10:00
Ciarán O'Mara
a51e91141f Merge branch 'hotfix/isnextmapped' 2020-07-08 23:06:44 +10:00
Ciarán O'Mara
149d2cd898 Merge branch 'master' into develop 2020-07-08 23:06:44 +10:00
Diego Alvarez
639b8238c7 Correct scope 2020-07-08 11:57:31 +10:00
Ciarán O'Mara
eb11106b01 Increment version 2020-07-08 11:03:10 +10:00
Ciarán O'Mara
dfa5a3217f Merge branch 'release/v0.2.5' 2020-06-22 10:48:03 +10:00
Ciarán O'Mara
b97c97e90f Merge branch 'master' into develop 2020-06-22 10:48:03 +10:00
Ciarán O'Mara
bde477d54f Increment version 2020-06-22 10:35:34 +10:00
Ciarán O'Mara
6141d679e8 Use copyto! 
https://github.com/BioJulia/BioSequences.jl/pull/95
 2020-06-22 10:30:51 +10:00
Ciarán O'Mara
946068b2f3 Simplify use of appendfrom! 2020-06-22 10:30:51 +10:00
Ciarán O'Mara
436cfd84ba Use @info 2020-06-20 23:32:01 +10:00
Ciarán O'Mara
73de48e232 Move imports 2020-06-20 23:31:53 +10:00
Ciarán O'Mara
0ac352f1d2 Isolate testsets 2020-06-20 23:31:45 +10:00
Ciarán O'Mara
eaf5c73eb5 Update CI and documentation for the general registry 
- Update documentation workflow.
- Update CompatHelper workflow.
- Update TagBot workflow.
- Update unit test workflow.
- Update codecov.
 2020-06-20 23:31:02 +10:00
Ciarán O'Mara
81dbf41798 Merge branch 'master' into develop 2020-05-22 13:03:58 +10:00
Ciarán O'Mara
551a5906c5
Merge pull request #12 from BioJulia/hotfix/iterate 
hotfix/iterate
 2020-05-22 12:53:43 +10:00
Ciarán O'Mara
8b7a2ecc2b Correct not found check 2020-05-22 12:12:37 +10:00
Ciarán O'Mara
cc18311539 Increment version 2020-05-22 12:12:37 +10:00
Ciarán O'Mara
32a2b129e1 Merge branch 'master' into develop 2020-04-18 00:26:14 +10:00
Ciarán O'Mara
060349bd2b Merge branch 'hotfix/iteration' 2020-04-18 00:26:14 +10:00
Ciarán O'Mara
b440bc3c4d Update documentation 2020-04-17 15:56:23 +10:00
Ciarán O'Mara
f00547177f Empty records during iteration 2020-04-17 15:56:23 +10:00
Ciarán O'Mara
300158dbef Record equivalency functions 2020-04-17 15:56:23 +10:00
Ciarán O'Mara
5fa8c5bd2e Tests for in-place-reading pattern 2020-04-17 15:51:11 +10:00
Ciarán O'Mara
bb13a38cf7 Increment version 2020-04-17 15:49:24 +10:00
Ciarán O'Mara
af675a2371 Merge branch 'master' into develop 2020-04-12 17:35:21 +10:00
Ciarán O'Mara
0e0908f985 Merge branch 'hotfix/memory' 2020-04-12 17:35:21 +10:00
Ciarán O'Mara
3e1a802372 Ensure fields are empty 2020-04-12 17:35:01 +10:00
Ciarán O'Mara
89d7e94f77 Increment version 2020-04-12 17:23:31 +10:00
Ciarán O'Mara
aec919c713 Use unsafe copy 2020-03-21 17:34:10 +11:00
Ciarán O'Mara
6ae1180cfa Merge branch 'hotfix/header' 2020-03-21 17:28:02 +11:00
Ciarán O'Mara
429f69d84b Merge branch 'master' into develop 2020-03-21 17:28:02 +11:00
Ciarán O'Mara
d0e2560ec4 Correct header parsing 2020-03-21 17:18:39 +11:00
Ciarán O'Mara
e69c6de586 Equality comparators 2020-03-21 17:18:34 +11:00
Ciarán O'Mara
f6846edfb1 Check header in roundtrip 2020-03-21 17:16:14 +11:00