millironx/cowcalf-rumen-metagenomic-pipeline
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An end-to-end script to convert Illumina shotgun sequences and metadata into full-blown diversity tables and visualizations.
5 commits 1 branch 0 tags 48 KiB
Shell 81.8%
R 18.2%
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Thomas A. Christensen II c5121e4ed6 Added additional files to gitignore
2019-05-16 23:25:22 -06:00
.gitignore Added additional files to gitignore 2019-05-16 23:25:22 -06:00
fastq-to-taxonomy.sh Initial commit 2019-05-13 10:09:48 -06:00
fetchmetadata.R Initial commit 2019-05-13 10:09:48 -06:00
main.sh Added automated rarefaction selection 2019-05-16 23:06:06 -06:00
manipulatefeaturetable.R Added automated rarefaction selection 2019-05-16 23:06:06 -06:00
VisualStudioCode.gitignore Added gitignore 2019-05-16 23:08:45 -06:00