millironx/cowcalf-rumen-metagenomic-pipeline
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An end-to-end script to convert Illumina shotgun sequences and metadata into full-blown diversity tables and visualizations.
2 commits 1 branch 0 tags 48 KiB
Shell 81.8%
R 18.2%
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Thomas A. Christensen II d1fadc00a9 Made parallel processing more efficent
2019-05-16 22:44:54 -06:00
fastq-to-taxonomy.sh Initial commit 2019-05-13 10:09:48 -06:00
fetchmetadata.R Initial commit 2019-05-13 10:09:48 -06:00
main.sh Made parallel processing more efficent 2019-05-16 22:44:54 -06:00
manipulatefeaturetable.R Initial commit 2019-05-13 10:09:48 -06:00