millironx/cowcalf-rumen-metagenomic-pipeline
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An end-to-end script to convert Illumina shotgun sequences and metadata into full-blown diversity tables and visualizations.
11 commits 1 branch 0 tags 48 KiB
Shell 81.8%
R 18.2%
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Thomas A. Christensen II f0c97ab6ea
Create LICENSE
2021-04-21 11:34:41 -06:00
.vscode Fixed all shellcheck issues 2019-05-21 10:28:18 -06:00
.gitignore Fixed gitignore 2019-05-16 23:31:51 -06:00
fastq-to-taxonomy.sh Initial commit 2019-05-13 10:09:48 -06:00
fetchmetadata.R Initial commit 2019-05-13 10:09:48 -06:00
LICENSE Create LICENSE 2021-04-21 11:34:41 -06:00
main.sh Fixed find and xargs to actually work together 2019-05-24 11:21:45 -06:00
manipulatefeaturetable.R Added automated rarefaction selection 2019-05-16 23:06:06 -06:00
sample-classifier.sh Fixed all shellcheck issues 2019-05-21 10:28:18 -06:00
sample-regression.sh Fixed all shellcheck issues 2019-05-21 10:28:18 -06:00