mirror of
https://github.com/MillironX/docker-BioJulia.git
synced 2024-11-21 22:36:05 +00:00
[⚡ AUTOMATED]: Pkg upgrade for 2023-09-02
Files changed:\nM Manifest.toml
This commit is contained in:
parent
7517187f3a
commit
8239c6f180
1 changed files with 78 additions and 84 deletions
162
Manifest.toml
162
Manifest.toml
|
@ -1,9 +1,9 @@
|
||||||
# This file is machine-generated - editing it directly is not advised
|
# This file is machine-generated - editing it directly is not advised
|
||||||
|
|
||||||
[[ADTypes]]
|
[[ADTypes]]
|
||||||
git-tree-sha1 = "f5c25e8a5b29b5e941b7408bc8cc79fea4d9ef9a"
|
git-tree-sha1 = "a4c8e0f8c09d4aa708289c1a5fc23e2d1970017a"
|
||||||
uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
|
uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
|
||||||
version = "0.1.6"
|
version = "0.2.1"
|
||||||
|
|
||||||
[[AbstractFFTs]]
|
[[AbstractFFTs]]
|
||||||
deps = ["ChainRulesCore", "LinearAlgebra", "Test"]
|
deps = ["ChainRulesCore", "LinearAlgebra", "Test"]
|
||||||
|
@ -63,9 +63,9 @@ version = "0.1.29"
|
||||||
|
|
||||||
[[ArrayLayouts]]
|
[[ArrayLayouts]]
|
||||||
deps = ["FillArrays", "LinearAlgebra", "SparseArrays"]
|
deps = ["FillArrays", "LinearAlgebra", "SparseArrays"]
|
||||||
git-tree-sha1 = "6189f7819e6345bcc097331c7db571f2f211364f"
|
git-tree-sha1 = "dcda7e0ac618210eabf43751d5cafde100dd539b"
|
||||||
uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
|
uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
|
||||||
version = "1.1.1"
|
version = "1.3.0"
|
||||||
|
|
||||||
[[Artifacts]]
|
[[Artifacts]]
|
||||||
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
|
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
|
||||||
|
@ -119,9 +119,9 @@ version = "0.3.2"
|
||||||
|
|
||||||
[[BandedMatrices]]
|
[[BandedMatrices]]
|
||||||
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools", "SparseArrays"]
|
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools", "SparseArrays"]
|
||||||
git-tree-sha1 = "6e9b384d5e21452bc81cae3552c74f430e320985"
|
git-tree-sha1 = "0b816941273b5b162be122a6c94d706e3b3125ca"
|
||||||
uuid = "aae01518-5342-5314-be14-df237901396f"
|
uuid = "aae01518-5342-5314-be14-df237901396f"
|
||||||
version = "0.17.35"
|
version = "0.17.38"
|
||||||
|
|
||||||
[[Base64]]
|
[[Base64]]
|
||||||
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
|
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
|
||||||
|
@ -187,10 +187,10 @@ uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b"
|
||||||
version = "0.1.5"
|
version = "0.1.5"
|
||||||
|
|
||||||
[[BoundaryValueDiffEq]]
|
[[BoundaryValueDiffEq]]
|
||||||
deps = ["BandedMatrices", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "NLsolve", "Reexport", "SciMLBase", "SparseArrays"]
|
deps = ["BandedMatrices", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "NonlinearSolve", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "TruncatedStacktraces"]
|
||||||
git-tree-sha1 = "ed8e837bfb3d1e3157022c9636ec1c722b637318"
|
git-tree-sha1 = "039775034259dfc1f106b195f69af7741f90ef10"
|
||||||
uuid = "764a87c0-6b3e-53db-9096-fe964310641d"
|
uuid = "764a87c0-6b3e-53db-9096-fe964310641d"
|
||||||
version = "2.11.0"
|
version = "3.0.0"
|
||||||
|
|
||||||
[[BufferedStreams]]
|
[[BufferedStreams]]
|
||||||
git-tree-sha1 = "4ae47f9a4b1dc19897d3743ff13685925c5202ec"
|
git-tree-sha1 = "4ae47f9a4b1dc19897d3743ff13685925c5202ec"
|
||||||
|
@ -294,9 +294,9 @@ version = "0.3.0"
|
||||||
|
|
||||||
[[CodecBzip2]]
|
[[CodecBzip2]]
|
||||||
deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"]
|
deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"]
|
||||||
git-tree-sha1 = "2e62a725210ce3c3c2e1a3080190e7ca491f18d7"
|
git-tree-sha1 = "ad41de3795924f7a056243eb3e4161448f0523e6"
|
||||||
uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd"
|
uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd"
|
||||||
version = "0.7.2"
|
version = "0.8.0"
|
||||||
|
|
||||||
[[CodecLz4]]
|
[[CodecLz4]]
|
||||||
deps = ["Lz4_jll", "TranscodingStreams"]
|
deps = ["Lz4_jll", "TranscodingStreams"]
|
||||||
|
@ -317,10 +317,10 @@ uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
|
||||||
version = "0.7.2"
|
version = "0.7.2"
|
||||||
|
|
||||||
[[CodecZstd]]
|
[[CodecZstd]]
|
||||||
deps = ["CEnum", "TranscodingStreams", "Zstd_jll"]
|
deps = ["TranscodingStreams", "Zstd_jll"]
|
||||||
git-tree-sha1 = "849470b337d0fa8449c21061de922386f32949d9"
|
git-tree-sha1 = "07678760fed490d76ecde99e8c9f415d341a199d"
|
||||||
uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2"
|
uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2"
|
||||||
version = "0.7.2"
|
version = "0.8.0"
|
||||||
|
|
||||||
[[ColorBrewer]]
|
[[ColorBrewer]]
|
||||||
deps = ["Colors", "JSON", "Test"]
|
deps = ["Colors", "JSON", "Test"]
|
||||||
|
@ -484,15 +484,15 @@ version = "0.4.0"
|
||||||
|
|
||||||
[[DiffEqBase]]
|
[[DiffEqBase]]
|
||||||
deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"]
|
deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"]
|
||||||
git-tree-sha1 = "5f9126d4fb0a114ef122610a902f23736e90e93c"
|
git-tree-sha1 = "df8638dbfa03d1b336c410e23a9dfbf89cb53937"
|
||||||
uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
|
uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
|
||||||
version = "6.128.1"
|
version = "6.128.2"
|
||||||
|
|
||||||
[[DiffEqCallbacks]]
|
[[DiffEqCallbacks]]
|
||||||
deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
|
deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
|
||||||
git-tree-sha1 = "303ab70e4524843653e55e16a3dc7b75e677a3dd"
|
git-tree-sha1 = "9c7d3a84264d935f6981504388b202a770113faa"
|
||||||
uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
|
uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
|
||||||
version = "2.27.0"
|
version = "2.29.1"
|
||||||
|
|
||||||
[[DiffEqNoiseProcess]]
|
[[DiffEqNoiseProcess]]
|
||||||
deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"]
|
deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"]
|
||||||
|
@ -514,9 +514,9 @@ version = "1.15.1"
|
||||||
|
|
||||||
[[DifferentialEquations]]
|
[[DifferentialEquations]]
|
||||||
deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"]
|
deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"]
|
||||||
git-tree-sha1 = "1cfe0178410e1bb4b14058c537d0f347eb9d95dc"
|
git-tree-sha1 = "9b2fef0d520066196dbd6761bbc15da5e6282d9e"
|
||||||
uuid = "0c46a032-eb83-5123-abaf-570d42b7fbaa"
|
uuid = "0c46a032-eb83-5123-abaf-570d42b7fbaa"
|
||||||
version = "7.8.0"
|
version = "7.9.0"
|
||||||
|
|
||||||
[[Discretizers]]
|
[[Discretizers]]
|
||||||
deps = ["DataStructures", "SpecialFunctions", "Statistics", "StatsBase"]
|
deps = ["DataStructures", "SpecialFunctions", "Statistics", "StatsBase"]
|
||||||
|
@ -654,9 +654,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
|
||||||
|
|
||||||
[[FillArrays]]
|
[[FillArrays]]
|
||||||
deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
|
deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
|
||||||
git-tree-sha1 = "f372472e8672b1d993e93dada09e23139b509f9e"
|
git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434"
|
||||||
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
|
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
|
||||||
version = "1.5.0"
|
version = "1.6.1"
|
||||||
|
|
||||||
[[FiniteDiff]]
|
[[FiniteDiff]]
|
||||||
deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"]
|
deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"]
|
||||||
|
@ -1115,10 +1115,10 @@ uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
|
||||||
version = "0.1.5"
|
version = "0.1.5"
|
||||||
|
|
||||||
[[JLLWrappers]]
|
[[JLLWrappers]]
|
||||||
deps = ["Preferences"]
|
deps = ["Artifacts", "Preferences"]
|
||||||
git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1"
|
git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca"
|
||||||
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
|
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
|
||||||
version = "1.4.1"
|
version = "1.5.0"
|
||||||
|
|
||||||
[[JSExpr]]
|
[[JSExpr]]
|
||||||
deps = ["JSON", "MacroTools", "Observables", "WebIO"]
|
deps = ["JSON", "MacroTools", "Observables", "WebIO"]
|
||||||
|
@ -1158,9 +1158,9 @@ version = "2.1.91+0"
|
||||||
|
|
||||||
[[JuliaInterpreter]]
|
[[JuliaInterpreter]]
|
||||||
deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
|
deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
|
||||||
git-tree-sha1 = "e8ab063deed72e14666f9d8af17bd5f9eab04392"
|
git-tree-sha1 = "81dc6aefcbe7421bd62cb6ca0e700779330acff8"
|
||||||
uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
|
uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
|
||||||
version = "0.9.24"
|
version = "0.9.25"
|
||||||
|
|
||||||
[[JuliaWebAPI]]
|
[[JuliaWebAPI]]
|
||||||
deps = ["Base64", "HTTP", "JSON", "Serialization", "Sockets", "ZMQ"]
|
deps = ["Base64", "HTTP", "JSON", "Serialization", "Sockets", "ZMQ"]
|
||||||
|
@ -1170,9 +1170,9 @@ version = "0.6.3"
|
||||||
|
|
||||||
[[JumpProcesses]]
|
[[JumpProcesses]]
|
||||||
deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"]
|
deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"]
|
||||||
git-tree-sha1 = "add0bfe9091a0148a358dc8c52d5ac60806da76c"
|
git-tree-sha1 = "61068b4df1e434c26ff8b876fbaf2be3e3e44d27"
|
||||||
uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5"
|
uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5"
|
||||||
version = "9.7.2"
|
version = "9.7.3"
|
||||||
|
|
||||||
[[KLU]]
|
[[KLU]]
|
||||||
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"]
|
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"]
|
||||||
|
@ -1200,9 +1200,9 @@ version = "0.2.6"
|
||||||
|
|
||||||
[[Krylov]]
|
[[Krylov]]
|
||||||
deps = ["LinearAlgebra", "Printf", "SparseArrays"]
|
deps = ["LinearAlgebra", "Printf", "SparseArrays"]
|
||||||
git-tree-sha1 = "fbda7c58464204d92f3b158578fb0b3d4224cea5"
|
git-tree-sha1 = "17e462054b42dcdda73e9a9ba0c67754170c88ae"
|
||||||
uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7"
|
uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7"
|
||||||
version = "0.9.3"
|
version = "0.9.4"
|
||||||
|
|
||||||
[[LAME_jll]]
|
[[LAME_jll]]
|
||||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
||||||
|
@ -1322,10 +1322,10 @@ uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8"
|
||||||
version = "1.42.0+0"
|
version = "1.42.0+0"
|
||||||
|
|
||||||
[[Libiconv_jll]]
|
[[Libiconv_jll]]
|
||||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
deps = ["Artifacts", "JLLWrappers", "Libdl"]
|
||||||
git-tree-sha1 = "c7cb1f5d892775ba13767a87c7ada0b980ea0a71"
|
git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175"
|
||||||
uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
|
uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
|
||||||
version = "1.16.1+2"
|
version = "1.17.0+0"
|
||||||
|
|
||||||
[[Libmount_jll]]
|
[[Libmount_jll]]
|
||||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
||||||
|
@ -1375,9 +1375,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
|
||||||
|
|
||||||
[[LinearSolve]]
|
[[LinearSolve]]
|
||||||
deps = ["ArrayInterface", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
|
deps = ["ArrayInterface", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
|
||||||
git-tree-sha1 = "f746a5b9522815bf098049f9cbfbfcae53f29450"
|
git-tree-sha1 = "69cbd612e6e67ba2f8121bc8725bc9d04d803599"
|
||||||
uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
|
uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
|
||||||
version = "2.5.0"
|
version = "2.5.1"
|
||||||
|
|
||||||
[[LittleCMS_jll]]
|
[[LittleCMS_jll]]
|
||||||
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg"]
|
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg"]
|
||||||
|
@ -1387,9 +1387,9 @@ version = "2.12.0+0"
|
||||||
|
|
||||||
[[LogExpFunctions]]
|
[[LogExpFunctions]]
|
||||||
deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
|
deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
|
||||||
git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f"
|
git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa"
|
||||||
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
|
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
|
||||||
version = "0.3.24"
|
version = "0.3.26"
|
||||||
|
|
||||||
[[Logging]]
|
[[Logging]]
|
||||||
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
|
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
|
||||||
|
@ -1401,10 +1401,10 @@ uuid = "bdcacae8-1622-11e9-2a5c-532679323890"
|
||||||
version = "0.12.165"
|
version = "0.12.165"
|
||||||
|
|
||||||
[[Lz4_jll]]
|
[[Lz4_jll]]
|
||||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
deps = ["Artifacts", "JLLWrappers", "Libdl"]
|
||||||
git-tree-sha1 = "5d494bc6e85c4c9b626ee0cab05daa4085486ab1"
|
git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a"
|
||||||
uuid = "5ced341a-0733-55b8-9ab6-a4889d929147"
|
uuid = "5ced341a-0733-55b8-9ab6-a4889d929147"
|
||||||
version = "1.9.3+0"
|
version = "1.9.4+0"
|
||||||
|
|
||||||
[[MKL_jll]]
|
[[MKL_jll]]
|
||||||
deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
|
deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
|
||||||
|
@ -1414,9 +1414,9 @@ version = "2023.2.0+0"
|
||||||
|
|
||||||
[[MLBase]]
|
[[MLBase]]
|
||||||
deps = ["IterTools", "Random", "Reexport", "StatsBase"]
|
deps = ["IterTools", "Random", "Reexport", "StatsBase"]
|
||||||
git-tree-sha1 = "a0242608e72ba745d43ec385b2e95a562633f8fc"
|
git-tree-sha1 = "ac79beff4257e6e80004d5aee25ffeee79d91263"
|
||||||
uuid = "f0e99cf1-93fa-52ec-9ecc-5026115318e0"
|
uuid = "f0e99cf1-93fa-52ec-9ecc-5026115318e0"
|
||||||
version = "0.9.1"
|
version = "0.9.2"
|
||||||
|
|
||||||
[[MMTF]]
|
[[MMTF]]
|
||||||
deps = ["CodecZlib", "Downloads", "MsgPack"]
|
deps = ["CodecZlib", "Downloads", "MsgPack"]
|
||||||
|
@ -1426,9 +1426,9 @@ version = "1.0.0"
|
||||||
|
|
||||||
[[MacroTools]]
|
[[MacroTools]]
|
||||||
deps = ["Markdown", "Random"]
|
deps = ["Markdown", "Random"]
|
||||||
git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2"
|
git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48"
|
||||||
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
|
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
|
||||||
version = "0.5.10"
|
version = "0.5.11"
|
||||||
|
|
||||||
[[MakieCore]]
|
[[MakieCore]]
|
||||||
deps = ["Observables"]
|
deps = ["Observables"]
|
||||||
|
@ -1456,12 +1456,6 @@ version = "0.1.8"
|
||||||
deps = ["Base64"]
|
deps = ["Base64"]
|
||||||
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
|
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
|
||||||
|
|
||||||
[[MathOptInterface]]
|
|
||||||
deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
|
|
||||||
git-tree-sha1 = "5c5cd501ae1d76d3ccd7c7e6b4325a15dde7f31c"
|
|
||||||
uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
|
|
||||||
version = "1.18.0"
|
|
||||||
|
|
||||||
[[MathProgBase]]
|
[[MathProgBase]]
|
||||||
deps = ["LinearAlgebra", "SparseArrays"]
|
deps = ["LinearAlgebra", "SparseArrays"]
|
||||||
git-tree-sha1 = "9abbe463a1e9fc507f12a69e7f29346c2cdc472c"
|
git-tree-sha1 = "9abbe463a1e9fc507f12a69e7f29346c2cdc472c"
|
||||||
|
@ -1538,9 +1532,9 @@ version = "1.0.17"
|
||||||
|
|
||||||
[[MutableArithmetics]]
|
[[MutableArithmetics]]
|
||||||
deps = ["LinearAlgebra", "SparseArrays", "Test"]
|
deps = ["LinearAlgebra", "SparseArrays", "Test"]
|
||||||
git-tree-sha1 = "964cb1a7069723727025ae295408747a0b36a854"
|
git-tree-sha1 = "5879579adbd9bc3017fe63c766371aace1a1d641"
|
||||||
uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
|
uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
|
||||||
version = "1.3.0"
|
version = "1.3.1"
|
||||||
|
|
||||||
[[MyterialColors]]
|
[[MyterialColors]]
|
||||||
git-tree-sha1 = "01d8466fb449436348999d7c6ad740f8f853a579"
|
git-tree-sha1 = "01d8466fb449436348999d7c6ad740f8f853a579"
|
||||||
|
@ -1554,10 +1548,10 @@ uuid = "d41bc354-129a-5804-8e4c-c37616107c6c"
|
||||||
version = "7.8.3"
|
version = "7.8.3"
|
||||||
|
|
||||||
[[NLopt]]
|
[[NLopt]]
|
||||||
deps = ["MathOptInterface", "MathProgBase", "NLopt_jll"]
|
deps = ["MathProgBase", "NLopt_jll"]
|
||||||
git-tree-sha1 = "5a7e32c569200a8a03c3d55d286254b0321cd262"
|
git-tree-sha1 = "48d523294d66f34d012e224ec3082d35c395ebd2"
|
||||||
uuid = "76087f3c-5699-56af-9a33-bf431cd00edd"
|
uuid = "76087f3c-5699-56af-9a33-bf431cd00edd"
|
||||||
version = "0.6.5"
|
version = "0.6.0"
|
||||||
|
|
||||||
[[NLopt_jll]]
|
[[NLopt_jll]]
|
||||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
||||||
|
@ -1612,9 +1606,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
|
||||||
|
|
||||||
[[NonlinearSolve]]
|
[[NonlinearSolve]]
|
||||||
deps = ["ArrayInterface", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"]
|
deps = ["ArrayInterface", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"]
|
||||||
git-tree-sha1 = "23dabe80f8ebec9a68b0db4cd02f2d2cdbc4f653"
|
git-tree-sha1 = "ee53089df81a6bdf3c06c17cf674e90931b10a73"
|
||||||
uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
|
uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
|
||||||
version = "1.9.0"
|
version = "1.10.0"
|
||||||
|
|
||||||
[[Observables]]
|
[[Observables]]
|
||||||
git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93"
|
git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93"
|
||||||
|
@ -1685,9 +1679,9 @@ version = "0.5.5+0"
|
||||||
|
|
||||||
[[Optim]]
|
[[Optim]]
|
||||||
deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"]
|
deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"]
|
||||||
git-tree-sha1 = "e3a6546c1577bfd701771b477b794a52949e7594"
|
git-tree-sha1 = "963b004d15216f8129f6c0f7d187efa136570be0"
|
||||||
uuid = "429524aa-4258-5aef-a3af-852621145aeb"
|
uuid = "429524aa-4258-5aef-a3af-852621145aeb"
|
||||||
version = "1.7.6"
|
version = "1.7.7"
|
||||||
|
|
||||||
[[Opus_jll]]
|
[[Opus_jll]]
|
||||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
||||||
|
@ -1702,9 +1696,9 @@ version = "1.6.2"
|
||||||
|
|
||||||
[[OrdinaryDiffEq]]
|
[[OrdinaryDiffEq]]
|
||||||
deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"]
|
deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"]
|
||||||
git-tree-sha1 = "47c560dcb059570bdbd9f887a6b8958190e498a4"
|
git-tree-sha1 = "ba3ed480f991b846cf9a8118d3370d9752e7166d"
|
||||||
uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
|
uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
|
||||||
version = "6.53.4"
|
version = "6.55.0"
|
||||||
|
|
||||||
[[PCRE2_jll]]
|
[[PCRE2_jll]]
|
||||||
deps = ["Artifacts", "Libdl"]
|
deps = ["Artifacts", "Libdl"]
|
||||||
|
@ -1781,9 +1775,9 @@ uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
|
||||||
|
|
||||||
[[PkgVersion]]
|
[[PkgVersion]]
|
||||||
deps = ["Pkg"]
|
deps = ["Pkg"]
|
||||||
git-tree-sha1 = "f6cf8e7944e50901594838951729a1861e668cb8"
|
git-tree-sha1 = "f9501cc0430a26bc3d156ae1b5b0c1b47af4d6da"
|
||||||
uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688"
|
uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688"
|
||||||
version = "0.3.2"
|
version = "0.3.3"
|
||||||
|
|
||||||
[[PlotThemes]]
|
[[PlotThemes]]
|
||||||
deps = ["PlotUtils", "Statistics"]
|
deps = ["PlotUtils", "Statistics"]
|
||||||
|
@ -1799,9 +1793,9 @@ version = "1.3.5"
|
||||||
|
|
||||||
[[Plots]]
|
[[Plots]]
|
||||||
deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"]
|
deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"]
|
||||||
git-tree-sha1 = "9f8675a55b37a70aa23177ec110f6e3f4dd68466"
|
git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5"
|
||||||
uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
|
uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
|
||||||
version = "1.38.17"
|
version = "1.39.0"
|
||||||
|
|
||||||
[[PoissonRandom]]
|
[[PoissonRandom]]
|
||||||
deps = ["Random"]
|
deps = ["Random"]
|
||||||
|
@ -1865,9 +1859,9 @@ version = "0.4.12"
|
||||||
|
|
||||||
[[PrecompileTools]]
|
[[PrecompileTools]]
|
||||||
deps = ["Preferences"]
|
deps = ["Preferences"]
|
||||||
git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81"
|
git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f"
|
||||||
uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
|
uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
|
||||||
version = "1.1.2"
|
version = "1.2.0"
|
||||||
|
|
||||||
[[Preferences]]
|
[[Preferences]]
|
||||||
deps = ["TOML"]
|
deps = ["TOML"]
|
||||||
|
@ -1903,9 +1897,9 @@ version = "0.1.4"
|
||||||
|
|
||||||
[[ProgressMeter]]
|
[[ProgressMeter]]
|
||||||
deps = ["Distributed", "Printf"]
|
deps = ["Distributed", "Printf"]
|
||||||
git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9"
|
git-tree-sha1 = "ae36206463b2395804f2787ffe172f44452b538d"
|
||||||
uuid = "92933f4c-e287-5a05-a399-4b506db050ca"
|
uuid = "92933f4c-e287-5a05-a399-4b506db050ca"
|
||||||
version = "1.7.2"
|
version = "1.8.0"
|
||||||
|
|
||||||
[[ProtoBuf]]
|
[[ProtoBuf]]
|
||||||
deps = ["BufferedStreams", "Dates", "EnumX", "TOML", "TranscodingStreams"]
|
deps = ["BufferedStreams", "Dates", "EnumX", "TOML", "TranscodingStreams"]
|
||||||
|
@ -2090,10 +2084,10 @@ uuid = "7b38b023-a4d7-4c5e-8d43-3f3097f304eb"
|
||||||
version = "0.4.0"
|
version = "0.4.0"
|
||||||
|
|
||||||
[[SciMLBase]]
|
[[SciMLBase]]
|
||||||
deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"]
|
deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
|
||||||
git-tree-sha1 = "04370090604cd399db5bebddb636d80ab9d338e9"
|
git-tree-sha1 = "a1e295a85fd6fae9a7b2072dd4577001210f512d"
|
||||||
uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
|
uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
|
||||||
version = "1.94.0"
|
version = "1.95.0"
|
||||||
|
|
||||||
[[SciMLNLSolve]]
|
[[SciMLNLSolve]]
|
||||||
deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"]
|
deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"]
|
||||||
|
@ -2204,10 +2198,10 @@ deps = ["LinearAlgebra", "Random"]
|
||||||
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
|
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
|
||||||
|
|
||||||
[[SparseDiffTools]]
|
[[SparseDiffTools]]
|
||||||
deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "Reexport", "Requires", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "VertexSafeGraphs"]
|
deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"]
|
||||||
git-tree-sha1 = "4c1a57bcbc0b795fbfdc2009e70f9c2fd2815bfe"
|
git-tree-sha1 = "b3eb6747277d9919f5527ad9053f6d2fb1166516"
|
||||||
uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
|
uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
|
||||||
version = "2.4.1"
|
version = "2.5.1"
|
||||||
|
|
||||||
[[Sparspak]]
|
[[Sparspak]]
|
||||||
deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"]
|
deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"]
|
||||||
|
@ -2234,10 +2228,10 @@ uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
|
||||||
version = "0.8.8"
|
version = "0.8.8"
|
||||||
|
|
||||||
[[StaticArrayInterface]]
|
[[StaticArrayInterface]]
|
||||||
deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "Static", "SuiteSparse"]
|
deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"]
|
||||||
git-tree-sha1 = "33040351d2403b84afce74dae2e22d3f5b18edcb"
|
git-tree-sha1 = "03fec6800a986d191f64f5c0996b59ed526eda25"
|
||||||
uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718"
|
uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718"
|
||||||
version = "1.4.0"
|
version = "1.4.1"
|
||||||
|
|
||||||
[[StaticArrays]]
|
[[StaticArrays]]
|
||||||
deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"]
|
deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"]
|
||||||
|
@ -2516,9 +2510,9 @@ version = "3.6.0"
|
||||||
|
|
||||||
[[Unitful]]
|
[[Unitful]]
|
||||||
deps = ["ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "Random"]
|
deps = ["ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "Random"]
|
||||||
git-tree-sha1 = "607c142139151faa591b5e80d8055a15e487095b"
|
git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee"
|
||||||
uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
|
uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
|
||||||
version = "1.16.3"
|
version = "1.17.0"
|
||||||
|
|
||||||
[[UnitfulLatexify]]
|
[[UnitfulLatexify]]
|
||||||
deps = ["LaTeXStrings", "Latexify", "Unitful"]
|
deps = ["LaTeXStrings", "Latexify", "Unitful"]
|
||||||
|
@ -2615,10 +2609,10 @@ uuid = "d759349c-bcba-11e9-07c2-5b90f8f05f7c"
|
||||||
version = "0.3.1"
|
version = "0.3.1"
|
||||||
|
|
||||||
[[XML2_jll]]
|
[[XML2_jll]]
|
||||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"]
|
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
|
||||||
git-tree-sha1 = "93c41695bc1c08c46c5899f4fe06d6ead504bb73"
|
git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4"
|
||||||
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
|
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
|
||||||
version = "2.10.3+0"
|
version = "2.10.4+0"
|
||||||
|
|
||||||
[[XMLDict]]
|
[[XMLDict]]
|
||||||
deps = ["EzXML", "IterTools", "OrderedCollections"]
|
deps = ["EzXML", "IterTools", "OrderedCollections"]
|
||||||
|
|
Loading…
Reference in a new issue