[⚡ AUTOMATED]: Pkg upgrade for 2023-12-16

Files changed:\nM	Manifest.toml

Manifest.toml

@@ -18,9 +18,9 @@ version = "0.4.4"
 
 [[Adapt]]
 deps = ["LinearAlgebra", "Requires"]
-git-tree-sha1 = "02f731463748db57cc2ebfbd9fbc9ce8280d3433"
+git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608"
 uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-version = "3.7.1"
+version = "3.7.2"
 
 [[ArgParse]]
 deps = ["Logging", "TextWrap"]
@@ -57,9 +57,9 @@ version = "7.5.1"
 
 [[ArrayLayouts]]
 deps = ["FillArrays", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "af43df5704827c8618afd36eb56fcab20d3041ee"
+git-tree-sha1 = "b08a4043e1c14096ef8efe4dd97e07de5cacf240"
 uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
-version = "1.4.3"
+version = "1.4.5"
 
 [[Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
@@ -123,9 +123,9 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
 [[BenchmarkTools]]
 deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"]
-git-tree-sha1 = "d9a9701b899b30332bbcb3e1679c41cce81fb0e8"
+git-tree-sha1 = "f1f03a9fa24271160ed7e73051fba3c1a759b53f"
 uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
-version = "1.3.2"
+version = "1.4.0"
 
 [[BigWig]]
 deps = ["BBI", "BioCore", "BufferedStreams", "GenomicFeatures", "Libz"]
@@ -247,9 +247,9 @@ version = "0.2.2"
 
 [[ChainRules]]
 deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
-git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27"
+git-tree-sha1 = "0aa0a3dd7b9bacbbadf1932ccbdfa938985c5561"
 uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
-version = "1.58.0"
+version = "1.58.1"
 
 [[ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra", "SparseArrays"]
@@ -468,9 +468,9 @@ version = "0.12.4"
 
 [[DelayDiffEq]]
 deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"]
-git-tree-sha1 = "df712c77bb43b37ea966feb72cb2e92d51a3face"
+git-tree-sha1 = "e40378efd2af7658d0a0579aa9e15b17137368f4"
 uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb"
-version = "5.43.1"
+version = "5.44.0"
 
 [[DelimitedFiles]]
 deps = ["Mmap"]
@@ -490,9 +490,9 @@ version = "6.130.0"
 
 [[DiffEqCallbacks]]
 deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "4e4de57a0ac47b2f20aae62f132355b058e9f0cd"
+git-tree-sha1 = "d0b94b3694d55e7eedeee918e7daee9e3b873399"
 uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
-version = "2.34.0"
+version = "2.35.0"
 
 [[DiffEqNoiseProcess]]
 deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"]
@@ -536,9 +536,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[Distributions]]
 deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
-git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a"
+git-tree-sha1 = "9242eec9b7e2e14f9952e8ea1c7e31a50501d587"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.103"
+version = "0.25.104"
 
 [[DocStringExtensions]]
 deps = ["LibGit2"]
@@ -622,9 +622,9 @@ version = "0.3.2"
 
 [[FFTW]]
 deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"]
-git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7"
+git-tree-sha1 = "ec22cbbcd01cba8f41eecd7d44aac1f23ee985e3"
 uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
-version = "1.7.1"
+version = "1.7.2"
 
 [[FFTW_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -666,9 +666,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
 [[FillArrays]]
 deps = ["LinearAlgebra", "PDMats", "Random", "SparseArrays", "Statistics"]
-git-tree-sha1 = "28e4e9c4b7b162398ec8004bdabe9a90c78c122d"
+git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "1.8.0"
+version = "1.9.3"
 
 [[FiniteDiff]]
 deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"]
@@ -1050,10 +1050,10 @@ uuid = "1d092043-8f09-5a30-832f-7509e371ab51"
 version = "0.1.5"
 
 [[IntelOpenMP_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32"
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "31d6adb719886d4e32e38197aae466e98881320b"
 uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0"
-version = "2023.2.0+0"
+version = "2024.0.0+0"
 
 [[Interact]]
 deps = ["CSSUtil", "InteractBase", "JSON", "Knockout", "Observables", "OrderedCollections", "Reexport", "WebIO", "Widgets"]
@@ -1152,9 +1152,9 @@ version = "0.21.4"
 
 [[JSON3]]
 deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"]
-git-tree-sha1 = "95220473901735a0f4df9d1ca5b171b568b2daa3"
+git-tree-sha1 = "eb3edce0ed4fa32f75a0a11217433c31d56bd48b"
 uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1"
-version = "1.13.2"
+version = "1.14.0"
 
 [[JavaCall]]
 deps = ["DataStructures", "Dates", "Libdl", "WinReg"]
@@ -1164,15 +1164,15 @@ version = "0.7.8"
 
 [[JpegTurbo]]
 deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"]
-git-tree-sha1 = "d65930fa2bc96b07d7691c652d701dcbe7d9cf0b"
+git-tree-sha1 = "fa6d0bcff8583bac20f1ffa708c3913ca605c611"
 uuid = "b835a17e-a41a-41e7-81f0-2f016b05efe0"
-version = "0.1.4"
+version = "0.1.5"
 
 [[JpegTurbo_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc"
+git-tree-sha1 = "60b1194df0a3298f460063de985eae7b01bc011a"
 uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8"
-version = "2.1.91+0"
+version = "3.0.1+0"
 
 [[JuliaInterpreter]]
 deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
@@ -1187,10 +1187,10 @@ uuid = "480116ec-64ea-5dec-baca-db6b11e96e37"
 version = "0.6.3"
 
 [[JumpProcesses]]
-deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"]
-git-tree-sha1 = "3de1d557e382cad270d921fbc22351f5628e7b1f"
+deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "UnPack"]
+git-tree-sha1 = "c451feb97251965a9fe40bacd62551a72cc5902c"
 uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5"
-version = "9.8.0"
+version = "9.10.1"
 
 [[KLU]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"]
@@ -1206,9 +1206,9 @@ version = "0.2.1"
 
 [[KernelDensity]]
 deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"]
-git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035"
+git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7"
 uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b"
-version = "0.6.7"
+version = "0.6.8"
 
 [[Knockout]]
 deps = ["JSExpr", "JSON", "Observables", "Test", "WebIO"]
@@ -1218,9 +1218,9 @@ version = "0.2.6"
 
 [[Krylov]]
 deps = ["LinearAlgebra", "Printf", "SparseArrays"]
-git-tree-sha1 = "17e462054b42dcdda73e9a9ba0c67754170c88ae"
+git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729"
 uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7"
-version = "0.9.4"
+version = "0.9.5"
 
 [[LAME_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1425,10 +1425,10 @@ uuid = "5ced341a-0733-55b8-9ab6-a4889d929147"
 version = "1.9.4+0"
 
 [[MKL_jll]]
-deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
-git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913"
+deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"]
+git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0"
 uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
-version = "2023.2.0+0"
+version = "2024.0.0+0"
 
 [[MLBase]]
 deps = ["IterTools", "Random", "Reexport", "StatsBase"]
@@ -1466,9 +1466,9 @@ version = "0.4.2"
 
 [[MarchingCubes]]
 deps = ["PrecompileTools", "StaticArrays"]
-git-tree-sha1 = "c8e29e2bacb98c9b6f10445227a8b0402f2f173a"
+git-tree-sha1 = "27d162f37cc29de047b527dab11a826dd3a650ad"
 uuid = "299715c1-40a9-479a-aaf9-4a633d36f717"
-version = "0.1.8"
+version = "0.1.9"
 
 [[Markdown]]
 deps = ["Base64"]
@@ -1527,9 +1527,9 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
 
 [[MsgPack]]
 deps = ["Serialization"]
-git-tree-sha1 = "fc8c15ca848b902015bd4a745d350f02cf791c2a"
+git-tree-sha1 = "f5db02ae992c260e4826fe78c942954b48e1d9c2"
 uuid = "99f44e22-a591-53d1-9472-aa23ef4bd671"
-version = "1.2.0"
+version = "1.2.1"
 
 [[MuladdMacro]]
 git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab"
@@ -1603,9 +1603,9 @@ version = "0.9.8"
 
 [[NearestNeighbors]]
 deps = ["Distances", "StaticArrays"]
-git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8"
+git-tree-sha1 = "3ef8ff4f011295fd938a521cb605099cecf084ca"
 uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce"
-version = "0.4.13"
+version = "0.4.15"
 
 [[Netpbm]]
 deps = ["FileIO", "ImageCore", "ImageMetadata"]
@@ -1730,9 +1730,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15"
 
 [[PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "4e5be6bb265d33669f98eb55d2a57addd1eeb72c"
+git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.30"
+version = "0.11.31"
 
 [[PGFPlots]]
 deps = ["ColorBrewer", "ColorSchemes", "Colors", "Contour", "DataFrames", "DelimitedFiles", "Discretizers", "Distributed", "ImageMagick", "Images", "Printf", "Requires", "StatsBase", "TikzPictures"]
@@ -1742,9 +1742,9 @@ version = "3.4.3"
 
 [[PNGFiles]]
 deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
-git-tree-sha1 = "eed372b0fa15624273a9cdb188b1b88476e6a233"
+git-tree-sha1 = "67186a2bc9a90f9f85ff3cc8277868961fb57cbd"
 uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883"
-version = "0.4.2"
+version = "0.4.3"
 
 [[PackageExtensionCompat]]
 deps = ["Requires", "TOML"]
@@ -2217,9 +2217,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
 [[SparseDiffTools]]
 deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"]
-git-tree-sha1 = "07272c80c278947baca092df0a01da4a10622ad5"
+git-tree-sha1 = "ddea63e5de5405878d990a2cea4fc1daf2d52d41"
 uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
-version = "2.13.0"
+version = "2.14.0"
 
 [[SparseInverseSubset]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
@@ -2253,15 +2253,15 @@ version = "0.8.8"
 
 [[StaticArrayInterface]]
 deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"]
-git-tree-sha1 = "03fec6800a986d191f64f5c0996b59ed526eda25"
+git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436"
 uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718"
-version = "1.4.1"
+version = "1.5.0"
 
 [[StaticArrays]]
 deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore", "Statistics"]
-git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87"
+git-tree-sha1 = "2aded4182a14b19e9b62b063c0ab561809b5af2c"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.7.0"
+version = "1.8.0"
 
 [[StaticArraysCore]]
 git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d"
@@ -2470,12 +2470,6 @@ git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
 version = "0.9.13"
 
-[[TreeViews]]
-deps = ["Test"]
-git-tree-sha1 = "8d0d7a3fe2f30d6a7f833a5f19f7c7a5b396eae6"
-uuid = "a2a6695c-b41b-5b7d-aed9-dbfdeacea5d7"
-version = "0.3.0"
-
 [[TriangularSolve]]
 deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"]
 git-tree-sha1 = "fadebab77bf3ae041f77346dd1c290173da5a443"
@@ -2635,9 +2629,9 @@ version = "0.3.1"
 
 [[XML2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
-git-tree-sha1 = "da69178aacc095066bad1f69d2f59a60a1dd8ad1"
+git-tree-sha1 = "801cbe47eae69adc50f36c3caec4758d2650741b"
 uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
-version = "2.12.0+0"
+version = "2.12.2+0"
 
 [[XMLDict]]
 deps = ["EzXML", "IterTools", "OrderedCollections"]
@@ -2854,10 +2848,10 @@ uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
 version = "2.0.2+0"
 
 [[libpng_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
-git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
+git-tree-sha1 = "93284c28274d9e75218a416c65ec49d0e0fcdf3d"
 uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
-version = "1.6.38+0"
+version = "1.6.40+0"
 
 [[libsixel_jll]]
 deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"]