mirror of
https://github.com/MillironX/docker-BioJulia.git
synced 2024-11-21 14:36:03 +00:00
[⚡ AUTOMATED]: Pkg upgrade for 2024-05-02
Files changed:\nM Manifest.toml
This commit is contained in:
MillironX
parent
e84424cff7
commit
882588b790
1 changed files with 61 additions and 49 deletions
110
Manifest.toml
110
Manifest.toml
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@ -28,6 +28,12 @@ git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608"
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uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
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version = "3.7.2"
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[[AliasTables]]
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deps = ["Random"]
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git-tree-sha1 = "07591db28451b3e45f4c0088a2d5e986ae5aa92d"
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uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8"
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version = "1.1.1"
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[[ArgParse]]
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deps = ["Logging", "TextWrap"]
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git-tree-sha1 = "d4eccacaa3a632e8717556479d45502af44b4c17"
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@ -253,9 +259,9 @@ version = "0.2.2"
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[[ChainRules]]
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deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
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git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c"
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git-tree-sha1 = "e7d1016142a71c980309114ee30a3e4f870902f4"
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uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
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version = "1.63.0"
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version = "1.65.0"
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[[ChainRulesCore]]
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deps = ["Compat", "LinearAlgebra", "SparseArrays"]
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@ -452,9 +458,9 @@ version = "1.6.1"
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[[DataStructures]]
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deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
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git-tree-sha1 = "97d79461925cdb635ee32116978fc735b9463a39"
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git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82"
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uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
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version = "0.18.19"
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version = "0.18.20"
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[[DataValueInterfaces]]
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git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
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@ -546,10 +552,10 @@ deps = ["Random", "Serialization", "Sockets"]
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uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
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[[Distributions]]
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deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
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git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169"
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deps = ["AliasTables", "ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
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git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2"
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uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
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version = "0.25.107"
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version = "0.25.108"
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[[DocStringExtensions]]
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deps = ["LibGit2"]
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@ -586,9 +592,9 @@ version = "0.0.20230411+0"
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[[Expat_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl"]
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git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c"
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git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7"
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uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
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version = "2.5.0+0"
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version = "2.6.2+0"
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[[ExponentialUtilities]]
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deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"]
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@ -677,9 +683,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
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[[FillArrays]]
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deps = ["LinearAlgebra", "PDMats", "SparseArrays", "Statistics"]
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git-tree-sha1 = "bfe82a708416cf00b73a3198db0859c82f741558"
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git-tree-sha1 = "57f08d5665e76397e96b168f9acc12ab17c84a68"
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uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
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version = "1.10.0"
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version = "1.10.2"
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[[FiniteDiff]]
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deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"]
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@ -923,9 +929,9 @@ version = "69.1.0+0"
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[[IRTools]]
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deps = ["InteractiveUtils", "MacroTools", "Test"]
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git-tree-sha1 = "5d8c5713f38f7bc029e26627b687710ba406d0dd"
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git-tree-sha1 = "d05027a62b4c9a2223820a9fdeae1110ad3946a5"
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uuid = "7869d1d1-7146-5819-86e3-90919afe41df"
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version = "0.4.12"
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version = "0.4.13"
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[[IfElse]]
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git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
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@ -1042,9 +1048,9 @@ version = "0.26.1"
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[[Imath_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl"]
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git-tree-sha1 = "3d09a9f60edf77f8a4d99f9e015e8fbf9989605d"
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git-tree-sha1 = "0936ba688c6d201805a83da835b55c61a180db52"
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uuid = "905a6f67-0a94-5f89-b386-d35d92009cd1"
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version = "3.1.7+0"
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version = "3.1.11+0"
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[[Indexes]]
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deps = ["BGZFStreams", "BioGenerics", "GenomicFeatures", "TranscodingStreams"]
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@ -1086,9 +1092,9 @@ version = "0.1.5"
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[[IntelOpenMP_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl"]
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git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b"
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git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4"
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uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0"
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version = "2024.0.2+0"
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version = "2024.1.0+0"
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[[Interact]]
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deps = ["CSSUtil", "InteractBase", "JSON", "Knockout", "Observables", "OrderedCollections", "Reexport", "WebIO", "Widgets"]
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@ -1125,9 +1131,9 @@ version = "1.1.0"
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[[InverseFunctions]]
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deps = ["Dates", "Test"]
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git-tree-sha1 = "896385798a8d49a255c398bd49162062e4a4c435"
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git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4"
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uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
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version = "0.1.13"
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version = "0.1.14"
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[[InvertedIndices]]
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git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038"
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@ -1241,9 +1247,9 @@ version = "0.2.1"
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[[KernelDensity]]
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deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"]
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git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7"
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git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1"
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uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b"
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version = "0.6.8"
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version = "0.6.9"
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[[Knockout]]
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deps = ["JSExpr", "JSON", "Observables", "Test", "WebIO"]
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@ -1253,9 +1259,9 @@ version = "0.2.6"
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[[Krylov]]
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deps = ["LinearAlgebra", "Printf", "SparseArrays"]
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git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729"
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git-tree-sha1 = "267dad6b4b7b5d529c76d40ff48d33f7e94cb834"
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uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7"
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version = "0.9.5"
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version = "0.9.6"
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[[LAME_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
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@ -1357,10 +1363,10 @@ uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490"
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version = "3.2.2+1"
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[[Libgcrypt_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"]
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git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae"
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"]
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git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673"
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uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4"
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version = "1.8.7+0"
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version = "1.8.11+0"
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[[Libglvnd_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"]
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@ -1382,9 +1388,9 @@ version = "1.17.0+0"
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[[Libmount_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl"]
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git-tree-sha1 = "dae976433497a2f841baadea93d27e68f1a12a97"
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git-tree-sha1 = "4b683b19157282f50bfd5dcaa2efe5295814ea22"
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uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
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version = "2.39.3+0"
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version = "2.40.0+0"
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[[Libtiff_jll]]
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deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"]
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@ -1394,9 +1400,9 @@ version = "4.4.0+0"
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[[Libuuid_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl"]
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git-tree-sha1 = "0a04a1318df1bf510beb2562cf90fb0c386f58c4"
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git-tree-sha1 = "27fd5cc10be85658cacfe11bb81bee216af13eda"
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uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700"
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version = "2.39.3+1"
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version = "2.40.0+0"
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[[Libz]]
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deps = ["BufferedStreams", "Random", "Test"]
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@ -1449,9 +1455,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
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[[LoopVectorization]]
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deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "SpecialFunctions", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"]
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git-tree-sha1 = "a13f3be5d84b9c95465d743c82af0b094ef9c2e2"
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git-tree-sha1 = "8f6786d8b2b3248d79db3ad359ce95382d5a6df8"
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uuid = "bdcacae8-1622-11e9-2a5c-532679323890"
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version = "0.12.169"
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version = "0.12.170"
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[[Lz4_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl"]
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@ -1460,10 +1466,10 @@ uuid = "5ced341a-0733-55b8-9ab6-a4889d929147"
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version = "1.9.4+0"
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[[MKL_jll]]
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deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"]
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git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0"
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deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"]
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git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b"
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uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
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version = "2024.0.0+0"
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version = "2024.1.0+0"
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[[MLBase]]
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deps = ["IterTools", "Random", "Reexport", "StatsBase"]
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@ -1511,9 +1517,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
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[[MathOptInterface]]
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deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
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git-tree-sha1 = "0958279282984a89e087fca415f01bee443154d5"
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git-tree-sha1 = "9cc5acd6b76174da7503d1de3a6f8cf639b6e5cb"
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uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
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version = "1.28.1"
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version = "1.29.0"
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[[MbedTLS]]
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deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"]
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@ -1585,9 +1591,9 @@ version = "1.0.19"
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[[MutableArithmetics]]
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deps = ["LinearAlgebra", "SparseArrays", "Test"]
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git-tree-sha1 = "2d106538aebe1c165e16d277914e10c550e9d9b7"
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git-tree-sha1 = "a3589efe0005fc4718775d8641b2de9060d23f73"
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uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
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version = "1.4.2"
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version = "1.4.4"
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[[MyterialColors]]
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git-tree-sha1 = "01d8466fb449436348999d7c6ad740f8f853a579"
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@ -1704,9 +1710,9 @@ version = "0.3.2"
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[[OpenEXR_jll]]
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deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Zlib_jll"]
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git-tree-sha1 = "a4ca623df1ae99d09bc9868b008262d0c0ac1e4f"
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git-tree-sha1 = "8292dd5c8a38257111ada2174000a33745b06d4e"
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uuid = "18a262bb-aa17-5467-a713-aee519bc75cb"
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version = "3.1.4+0"
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version = "3.2.4+0"
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[[OpenJpeg_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Libtiff_jll", "LittleCMS_jll", "Pkg", "libpng_jll"]
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@ -1858,9 +1864,9 @@ version = "0.4.4"
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[[Polyester]]
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deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"]
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git-tree-sha1 = "09f59c6dda37c7f73efddc5bdf6f92bc940eb484"
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git-tree-sha1 = "2ba5f33cbb51a85ef58a850749492b08f9bf2193"
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uuid = "f517fe37-dbe3-4b94-8317-1923a5111588"
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version = "0.7.12"
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version = "0.7.13"
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[[PolyesterWeave]]
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deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"]
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@ -2246,9 +2252,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
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[[SparseDiffTools]]
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deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"]
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git-tree-sha1 = "a616ac46c38da60ac05cecf52064d44732edd05e"
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git-tree-sha1 = "cce98ad7c896e52bb0eded174f02fc2a29c38477"
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uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
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version = "2.17.0"
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version = "2.18.0"
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[[SparseInverseSubset]]
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deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
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@ -2351,9 +2357,9 @@ version = "1.0.1"
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[[StrideArraysCore]]
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deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"]
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git-tree-sha1 = "b518da45c50dfab8384125ba829f1739bda41034"
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git-tree-sha1 = "25349bf8f63aa36acbff5e3550a86e9f5b0ef682"
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uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da"
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version = "0.5.5"
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version = "0.5.6"
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[[StringEncodings]]
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deps = ["Libiconv_jll"]
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@ -2581,9 +2587,9 @@ version = "0.5.6"
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[[VectorizationBase]]
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deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"]
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git-tree-sha1 = "7209df901e6ed7489fe9b7aa3e46fb788e15db85"
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git-tree-sha1 = "6129a4faf6242e7c3581116fbe3270f3ab17c90d"
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uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"
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version = "0.21.65"
|
||||
version = "0.21.67"
|
||||
|
||||
[[VertexSafeGraphs]]
|
||||
deps = ["Graphs"]
|
||||
|
|
@ -2904,6 +2910,12 @@ version = "1.3.7+1"
|
|||
deps = ["Artifacts", "Libdl"]
|
||||
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
|
||||
|
||||
[[oneTBB_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl"]
|
||||
git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493"
|
||||
uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e"
|
||||
version = "2021.12.0+0"
|
||||
|
||||
[[p7zip_jll]]
|
||||
deps = ["Artifacts", "Libdl"]
|
||||
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
|
||||
|
|
|
|||
Loading…
Reference in a new issue