haplotyper-battle-royale/modules/viquas/main.nf

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2023-08-09 21:07:54 +00:00
process VIQUAS {
tag "${prefix}"
label 'process_high'
input:
tuple val(prefix), path(bam)
path(reference)
output:
tuple val(prefix), path("*.fa")
publishDir "results/viquas", mode: 'copy'
script:
"""
viquas \\
${reference} \\
${bam}
"""
}