feat: Add PREDICTHAPLO module

modules/predicthaplo/main.nf

@@ -0,0 +1,23 @@
+process PREDICTHAPLO {
+    tag "${prefix}"
+    label 'process_high'
+
+    container 'quay.io/biocontainers/predicthaplo:2.1.4--h9b88814_5'
+
+    input:
+    tuple val(prefix), path(bam)
+    path(reference)
+
+    output:
+    tuple val(prefix), path("*.fa*")
+
+    publishDir "results/${task.process}", mode: 'copy'
+
+    script:
+    """
+    predicthaplo \\
+        --sam "${bam}" \\
+        --reference "${reference}" \\
+        --prefix "${prefix}"
+    """
+}