millironx/haplotyper-battle-royale
1
0
Fork 0
Code Issues Pull requests Releases Packages Activity

fix: Remove invalid shorah parameter

Browse source 
It turns out that -t threads only works for shorah shotgun, not shorah
amplicon. Remove the invalid parameter.
This commit is contained in:
Thomas A. Christensen II 2023-09-29 14:17:39 -05:00
parent b98a797701
commit 588d307ff6
Signed by: millironx
GPG key ID: 09335146883990B9
1 changed files with 0 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

1
modules/shorah/amplicon/main.nf
View file

@ -21,7 +21,6 @@ process SHORAH_AMPLICON {
script: script:
""" """
shorah amplicon \\ shorah amplicon \\
-t ${task.cpus} \\
-f ${reference} \\ -f ${reference} \\
-b ${bam} \\ -b ${bam} \\
""" """