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fix: Change input cardinality on haplotyping modules

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This commit is contained in:
Thomas A. Christensen II 2023-09-26 08:06:43 -05:00
parent 355ce9a00a
commit 9364225e74
Signed by: millironx
GPG key ID: 09335146883990B9
6 changed files with 6 additions and 6 deletions
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2
modules/cliquesnv/main.nf
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@ -5,7 +5,7 @@ process CLIQUESNV {
container 'quay.io/biocontainers/cliquesnv:2.0.3--hdfd78af_0'
input:
tuple val(prefix), path(bam)
tuple val(prefix), path(bam), path(bai)
val(method)
output:

2
modules/haplink/haplotypes/main.nf
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@ -5,7 +5,7 @@ process HAPLINK_HAPLOTYPES {
container 'quay.io/biocontainers/haplink:1.0.0--h031d066_0'
input:
tuple val(prefix), path(bam), path(bai)
tuple val(prefix), path(bam), path(bai), path(vcf)
path reference
output:

2
modules/predicthaplo/main.nf
View file

@ -5,7 +5,7 @@ process PREDICTHAPLO {
container 'quay.io/biocontainers/predicthaplo:2.1.4--h9b88814_5'
input:
tuple val(prefix), path(bam)
tuple val(prefix), path(bam), path(bai)
path(reference)
output:

2
modules/quasirecomb/main.nf
View file

@ -5,7 +5,7 @@ process QUASIRECOMB {
container 'quay.io/biocontainers/quasirecomb:1.2--hdfd78af_1'
input:
tuple val(prefix), path(bam)
tuple val(prefix), path(bam), path(bai)
output:
tuple val(prefix), path("*.fasta")

2
modules/shorah/amplicon/main.nf
View file

@ -5,7 +5,7 @@ process SHORAH_AMPLICON {
container 'quay.io/biocontainers/shorah:1.99.2--py38h73782ee_8'
input:
tuple val(prefix), path(bam)
tuple val(prefix), path(bam), path(bai)
path(reference)
output:

2
modules/shorah/shotgun/main.nf
View file

@ -5,7 +5,7 @@ process SHORAH_SHOTGUN {
container 'quay.io/biocontainers/shorah:1.99.2--py38h73782ee_8'
input:
tuple val(prefix), path(bam)
tuple val(prefix), path(bam), path(bai)
path(reference)
output: