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feat: Add CliqueSNV to pipeline

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This commit is contained in:
Thomas A. Christensen II 2023-09-25 18:44:50 -05:00
parent 96471746b9
commit d8fee48c28
Signed by: millironx
GPG key ID: 09335146883990B9
1 changed files with 5 additions and 5 deletions
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10
main.nf
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@ -34,6 +34,11 @@ workflow {
.out .out
.set { ch_alignments } .set { ch_alignments }
CLIQUESNV(
ch_alignments,
'snv-pacbio'
)
HAPLINK_VARIANTS( ch_alignments, ch_reference ) HAPLINK_VARIANTS( ch_alignments, ch_reference )
HAPLINK_VARIANTS HAPLINK_VARIANTS
.out .out
@ -75,9 +80,4 @@ workflow {
ch_alignments, ch_alignments,
ch_reference ch_reference
) )
CLIQUESNV(
ch_alignments,
'snv-pacbio'
)
} }